Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g254 ATGGAGGGGCATCATATCAGTGTTCATATCGATACGGGTGATAGGTTTCCTCAATGGAGTATTCAGGAGACAAAGGAGTTTTTGATGATTCGGGCAGAGTTGGATCGGACTTTCATGGAGACCAAACGGAACAAGCTTCTGTGGGAAGTGATTGCGAACAAGATGAAGGAGAAGGGCTATAATCGAAGCGCGGATCAGTGCAAGTGCAAGTGGAAGAATCTGGTCACCAGATACAAGGGATGCGAAACGATGGAGCCAGAAGCCATGAGGCAACAATTTCCGTTTTACAATGAGTTGCAGGCGATTTTCACAGCGAGGATGCAAAGAATGCTGTGGATTGAGGCAGAAGGCGGGGCAAAGAAGAAAGGGGTGCAGCTATCTTCGGAAGATGAAGACGAGAACGAGGAAAGCGAAGGGGAGAAGGGAAGCAGCAAGAAGAAGAAAAAGGGCAAGACCACAAAGGCGGATGAGAGAAGACATTCAATGGGAATGTTTTCTTTCGAGTGGGGTTATGTTTGA 519 47.4 MEGHHISVHIDTGDRFPQWSIQETKEFLMIRAELDRTFMETKRNKLLWEVIANKMKEKGYNRSADQCKCKWKNLVTRYKGCETMEPEAMRQQFPFYNELQAIFTARMQRMLWIEAEGGAKKKGVQLSSEDEDENEESEGEKGSSKKKKKGKTTKADERRHSMGMFSFEWGYV* 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7652567 7656300 + Vvi8g254 Vvi8g254 790477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g254 172 CDD GT1 17 82 - -
Vvi8g254 172 Gene3D - 19 80 - -
Vvi8g254 172 PANTHER - 7 156 - -
Vvi8g254 172 ProSiteProfiles Myb-like domain profile. 19 75 IPR001005 -
Vvi8g254 172 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 7 156 - -
Vvi8g254 172 MobiDBLite consensus disorder prediction 122 157 - -
Vvi8g254 172 Pfam Myb/SANT-like DNA-binding domain 18 102 IPR044822 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15155 PF13837 Myb_DNA-bind_4 3.90E-20 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g254 - - vvi:100259062 270.781