Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g276 ATGGCCGAAATGGATTGCGAACCCACTTCTAAAGAAGGAGAAGGGCAGGGGAAGCCCATTGTGGTATTGCTAATGGGTGCACCAGGTAGTGGCAAGTCCACCTTCTGCGAACATGTCATCCGATCCTCCACTCGACCCTGGGTTCGAGTCTGTCAGGACACCATTGGAAATGGTAAAGCTGGAACAAAATCTCAGTGCCTAAAGAGTGCAACAAGTGCATTGGAGGATGGCAAAAGTGTATTTATTGACAGATGCAATCTAGACAGGGAGCAGCGGGCAGAGTTTGTGAAGCTTGGCAGTCCCCAAGTTGAAATGCATGCTGTGGTGCTTGATCTTCCTGCCCAGCTTTGTATTTCTCGCTCTGTAAAGCGGACTGGACATGAAGGAAATTTGCAAGGGGGAAAAGCTGCTGCAGTAGTGAACAGAATGCTACAGAAGAAAGAATTGCCTAAATTGAGTGAAGGGTTCCACCGAATCACATTTTGCCAAAACGACAGTGATGTTCAAACTGCCCTCAACACTTATAGTGCACTTAGTCATCTTGATACTCTTCCACCTGGCTGTTTTGGCCAGAAGAACCCAGATGCCAAAATACAGCTAGCAAAGGATTCTTGCTGCAAACAACCAGAAGACATTTCCTCTTCATCTGGCAATGCTAAGGAAATAAAGGGTGGTGAAGACATAGTGGTACACTCTGTTGATGGAACTGTTTCTTCAAAAGATATTCCCACTTTAGCATTTCCATCTATTTCAACAGCAGATTTCCAATTTAACCATGAAAAAGCAGCTGATATTATTCTTGAGAAGGTTGAGGAATTTGTGAATAAGGTTGAAAATGCCAGGCTTGTTTTGGTAGACTTGTCTCATGGATCAAAGATTTTGTCTTTGGTTAGGGCTAAAGCTGCACAGAGAAATATTGACTCAAACAAGTTCTTTACATTTGTTGGAGATATAACTAGACTTTATTCAAAAGGAGGTCTGCGCTGCAATGCAATAGCTAATGCTGCCAACTGGAGATTGAAACCTGGAGGTGGAGGTGCAAACGCTGCAATATTTAGTGCTGCAGGTCCAGAACTAGAGGTTGAAACCAAGAAGCGAGCCGGATCTCTTATCCCTGGAAAAGCTTTGGTTGTCCCTCTTCCTTCAACTTCACCCTTGTTTAGCAGGGAAGGAGTAACGCATGTCATACATGTTCTTGGACCAAATATGAATCGACAAAGACCAAACTGTCTCAACAATGACTATGTCAAAGGCAGCAAAGTTCTTCGTGAGGCTTACACATCACTCTTTGAAGGTTTTGCATCTATAATGAATACCCAAGGAAATTTACTTGAGGGAAGCAGTGAAAACCTTAGGTCAGAGCTATCAAGAGTGGGGTTGAACAATGAAAAGATTGGTAGAAACATGACCAAGACCTGGGGTTCATGGGCTCAATCTCTTTACCACATTGCTATGCATCCTGAGAAGCATAAAGACAATTTGATAGAGATATCAGATGATGTTGTTGTATTGAATGACCTCTATCCAAAGGCACAAAGACACCTTCTGGTTCTGGCCCGATCTGAAGGTCTCGATTGTCTGGCAGATGTTGGTGGAGAACACCTTCAGTTATTGAGGACAATGCATGCTGTGGGTTTAAAGTGGGCTGAGAAGTTCTTATGTGAAGATGAATTGTTGGTCTTCCGCATTGGATACCATTCTGCACCATCAATGCGACAACTGCATCTACATGTTATCAGCCAGGATTTCAATTCCAAACATCTGAAGAATAAGAAACACTGGAACTCATTCAATTCTGCTTTCTTTCGTGATTCAGTAGATGTAATTGAAGAAATCACTAATCATGGAAGAGCAACAATAAAAGGTGAGGACAGCCAATTATCAATGGAGTTACGTTGCCATCGTTGTAGAAGTGCCCACCCTAACATGCCCCGGCTGAAATCGCACATCAGCAATTGCCAAGCCTCCTTTCCTCCATCTCTACTCCAAAATGACCGTCTTGTACTTGCACCCAGTAAATCAGGCAGTGAACCCTAG 2037 43.4 MAEMDCEPTSKEGEGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGTKSQCLKSATSALEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLDTLPPGCFGQKNPDAKIQLAKDSCCKQPEDISSSSGNAKEIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEKVEEFVNKVENARLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRCNAIANAANWRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVVPLPSTSPLFSREGVTHVIHVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMNTQGNLLEGSSENLRSELSRVGLNNEKIGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLNDLYPKAQRHLLVLARSEGLDCLADVGGEHLQLLRTMHAVGLKWAEKFLCEDELLVFRIGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNSAFFRDSVDVIEEITNHGRATIKGEDSQLSMELRCHRCRSAHPNMPRLKSHISNCQASFPPSLLQNDRLVLAPSKSGSEP* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8224481 8229313 - Vvi8g276 Vvi8g276 790499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g276 678 SMART YBR022w_8 310 474 IPR002589 -
Vvi8g276 678 Gene3D Leucine Aminopeptidase, subunit E, domain 1 293 437 IPR043472 -
Vvi8g276 678 SUPERFAMILY Macro domain-like 301 431 IPR043472 -
Vvi8g276 678 SUPERFAMILY HIT-like 465 637 IPR036265 -
Vvi8g276 678 ProSitePatterns HIT domain signature. 562 580 IPR019808 -
Vvi8g276 678 SUPERFAMILY Macro domain-like 237 286 IPR043472 -
Vvi8g276 678 Pfam Macro domain 333 406 IPR002589 -
Vvi8g276 678 Pfam Scavenger mRNA decapping enzyme C-term binding 482 593 - -
Vvi8g276 678 Gene3D - 2 177 IPR027417 -
Vvi8g276 678 Gene3D Leucine Aminopeptidase, subunit E, domain 1 226 292 IPR043472 -
Vvi8g276 678 Pfam C2HE / C2H2 / C2HC zinc-binding finger 598 651 IPR032566 -
Vvi8g276 678 Pfam AAA domain 21 146 - -
Vvi8g276 678 Gene3D - 475 657 IPR036265 -
Vvi8g276 678 PANTHER APRATAXIN 18 673 IPR026963 GO:0003677|GO:0006281|GO:0033699
Vvi8g276 678 PANTHER APRATAXIN-RELATED 18 673 - -
Vvi8g276 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 165 IPR027417 -
Vvi8g276 678 ProSiteProfiles Macro domain profile. 298 516 IPR002589 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g276 K10863 - vvi:100259037 1312.36