Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g291 ATGGCTACCATGGTTTTCTTCCAGTTTGCTTTTGCTGCTGTGACTGTGATACTCCTTGCTGGGTCTGTGCTGGGTCGAATGAGCATCAAAGCTTGGATGGCCTTTGTACCACTATGGATTACTTTTTCTTACAGCATTGGCGCTTTCAGTATATGGGGCGGCGGTTTCCTCTTTCAATGGGGCATCATGGACTATTCCGGTGGTTATGTCGTCCATTTAGCTTCTGGTGCTGCAGGATTCACAGCAGCTTATTGGGTGGGACCGAGATTGCAGGTAGACCGGGAACAATTCCCACCAAACAATCTTCTACTGGCACTGGCTGGTGCTGGTATTCTTTGGATGGGGTGGACAGGTTTCAATGGAGGTGACCCTTTTGCTGCAAATGTCGATTCCTCCCTTGCAGTTCTCAATACTCATATATGCGCAACAACCAGTCTCCTTGTATGGACTTTCTGGGATACGTTTTTCTTCAAGAAGCCCTCAGCAATTGGCGCCATCCAGGGAATGATAACTGGGTTGGTCTGCATCACCCCTGGTGCAGGTCTTGTTCAGGGATGGGCTGCATTGATAATGGGCATTGCATCTGGAAGTGTCCCCTGGTACACCATGATGTGTCTTAGTAAGAAACTCCCCTTCCTGCAGAAGATTGATGACACCCTCGGTGTCTTCCATACTCATGCTGTGGCTGGAACCTTGGGTGGGGCTCTTACGGGACTCTTTGCTCATCCAGATCTCTCTGCCTTATTCATAGTGGTACCCAATTCCAGAGGGGCCTTCTATGGTGGTCGGGGCGGTGTCCAATTTCTGAAGCAGTTGGTTGGTGCAAGCTTCATAATAGGTTGGAATGTAATAGTTACATCCATCATCCTCCTGGTGATTAGCAAGTTTATACCCCTTCGTATGTCTGAGGAAGAGCTCATAATAGGGGATGATGCAGCGCATGGAGAAGAAGCTTATGCTCTTGCTGGACAAGGAGCAAGAGAAAAATCTACATACAATAATATGCAGCTGCAAAACGCCTCAGGCTTTGAGCTTTGA 1038 48.27 MATMVFFQFAFAAVTVILLAGSVLGRMSIKAWMAFVPLWITFSYSIGAFSIWGGGFLFQWGIMDYSGGYVVHLASGAAGFTAAYWVGPRLQVDREQFPPNNLLLALAGAGILWMGWTGFNGGDPFAANVDSSLAVLNTHICATTSLLVWTFWDTFFFKKPSAIGAIQGMITGLVCITPGAGLVQGWAALIMGIASGSVPWYTMMCLSKKLPFLQKIDDTLGVFHTHAVAGTLGGALTGLFAHPDLSALFIVVPNSRGAFYGGRGGVQFLKQLVGASFIIGWNVIVTSIILLVISKFIPLRMSEEELIIGDDAAHGEEAYALAGQGAREKSTYNNMQLQNASGFEL* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8774572 8776213 - Vvi8g291 Vvi8g291 790514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g291 345 SUPERFAMILY Ammonium transporter 3 301 - -
Vvi8g291 345 ProSitePatterns Ammonium transporters signature. 64 89 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vvi8g291 345 Gene3D Ammonium transporter AmtB like domains 1 324 IPR029020 -
Vvi8g291 345 PANTHER TRANSPORTER 2, PUTATIVE-RELATED 1 341 - -
Vvi8g291 345 PANTHER AMMONIUM TRANSPORTER MEP2 1 341 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi8g291 345 Pfam Ammonium Transporter Family 4 319 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi8g291 345 PRINTS Rhesus blood group protein signature 8 24 IPR002229 GO:0005887
Vvi8g291 345 PRINTS Rhesus blood group protein signature 103 121 IPR002229 GO:0005887
Vvi8g291 345 PRINTS Rhesus blood group protein signature 134 156 IPR002229 GO:0005887
Vvi8g291 345 PRINTS Rhesus blood group protein signature 189 207 IPR002229 GO:0005887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g291 K03320 - vvi:100248822 646.736