Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g292 ATGGCCACGCTTGTCTACTTTCAGTTCACTTTTGCGGCCATTACGCTTATCCTGCTTGCTGGGTCCGTTCTTGGTCGGATGAACATTAAGGCATGGATGGCCTTTGTGCCTCTTTGGCTCATCTTCTCCTACACTGTTGGCGCCTTCAGTCTTTGGGGTGGTGGCTTCCTCTACCAGTGGGGCGTCATCGATTACTCCGGAGGTTATGTCATCCACCTCTCTTCAGGAATTGCTGGTCTCACTGCAGCTTATTGGGTCGGACCCAGATTGAAGAGTGATAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGTTCTCAACACAAACATATGTGCAGCAACCAGCCTCCTTGTATGGACTTCTTTGGATGTCATCTTCTTCAAGAAACCATCCGTGATCGGAGCTGTTCAGGGAATGATGACAGGCCTTGTTTGCATTACTCCAGGAGCAGGCGTAGTGCAATCTTGGGCGGCAATAGTGATGGGAATACTTTCCGGCAGCATTCCATGGGTGTCCATGATGATCCTTCATAAAAAGTCCAAATTACTACAAAAGGTTGACGACACACTAGGTGTATTTCACACGCATGCAGTGGCGGGACTGTTGGGTGGCCTCCTGACTGGACTCTTAGCAGAACCAGCGCTTTGCAGGCTCTTAAAACCAGAAAGCAATACGAGGGGTGCATTTTATGGTGGGAATGGTGGCAAGCAATTCATGAAGCAAATCGTTGCAGCCCTTTTTGTGATCGGTTGGAACATAGTAATCACCACACTGATTCTCCTAGCTATAAAGCTATTCCTACCTTTGAGGATGCCAGACGAGGAGCTGGTTATAGGAGATGATGCTGTCCATGGAGAGGAAGCGTATGCCCTTTGGGGTGACGGAGAGAGGTATGACCCAACAAAGCATGACCCAACAAAGCAAGATTGGCACGTGTCATCGTATTCTGGGGAAATAGCCCAATCCCCTTATGGCAGTGGTGCAAGAGGAGTAACTGTGGAGTTGTAA 1083 44.51 MATLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLNTNICAATSLLVWTSLDVIFFKKPSVIGAVQGMMTGLVCITPGAGVVQSWAAIVMGILSGSIPWVSMMILHKKSKLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLKPESNTRGAFYGGNGGKQFMKQIVAALFVIGWNIVITTLILLAIKLFLPLRMPDEELVIGDDAVHGEEAYALWGDGERYDPTKHDPTKQDWHVSSYSGEIAQSPYGSGARGVTVEL* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8786926 8789783 - Vvi8g292 Vvi8g292 790515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g292 360 PANTHER AMMONIUM TRANSPORTER 1 357 - -
Vvi8g292 360 Pfam Ammonium Transporter Family 4 92 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi8g292 360 Pfam Ammonium Transporter Family 128 314 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi8g292 360 ProSitePatterns Ammonium transporters signature. 64 89 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vvi8g292 360 PRINTS Rhesus blood group protein signature 8 24 IPR002229 GO:0005887
Vvi8g292 360 PRINTS Rhesus blood group protein signature 129 151 IPR002229 GO:0005887
Vvi8g292 360 PRINTS Rhesus blood group protein signature 184 202 IPR002229 GO:0005887
Vvi8g292 360 PRINTS Rhesus blood group protein signature 222 238 IPR002229 GO:0005887
Vvi8g292 360 SUPERFAMILY Ammonium transporter 3 296 - -
Vvi8g292 360 Gene3D Ammonium transporter AmtB like domains 1 101 IPR029020 -
Vvi8g292 360 PANTHER AMMONIUM TRANSPORTER MEP2 1 357 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi8g292 360 Gene3D Ammonium transporter AmtB like domains 118 317 IPR029020 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g292 K03320 - vvi:100250641 603.979