Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g302 ATGTTTGCAGGCTTCTCTTCGGCCACCGGAAAGCTAGCAGGCTCACATTACATACTGGGATGGACTGTATGTTCTGCCACCACGCTCGTCTTGCTTGTGATTGTGGTGTTCATCTCCTTGTATTATTTGCAGAGGTTAAAGTACAAGGATGTTTTAGAGGAGTGGGAACTGCAATGCTCTCACAGATTTCCATACAGGGACTTGTTTAAAGCCACCAAAGGTTTCAAGGACAGCGAGATCCTTGGATCAGGGGGTTTTGGCTGTGTGTACAAGGGAGTGTTACCTGCAACCCAAGAAGAAGTCGCGGTCAAGAAAATCTCCCACAATTCAAGACAGGGGATCAGGGAATTCATAATGGAGATAGCGAGCCTAGGACGCATGAGACACAAGCATCTAGTACACCTCCATGGATGGTGCAAGCACAAAGATGAACTCCTCCTTGTTTATGACTTCATGCCCAATGGAAGCCTTGGGGACATTCTCTTCAACCACAAAAAGTCGGGGATTCTCAGTTGGGAGCAGAGATTCAGTATCTTGAAAGGAGTTGCTTCCGCACTATTATATCTTCACGAAGAATGGGAGCAGGTGGTTGTCCATAGAGATGTGAAAGCCAACAATGTGTTACTTGATGCAGACATGAATGCAAGACTGGGGGATTTCGGGCTTGCCAGGTTGTATGATCATGGGGAGGAAGCCTGCACCACACATATAGTAGGCACATTAGGATACATAGCACCAGAATTATCGCGAACAGGAAAGGCCACAACTCATTGTGATATGTTTTCATATGGCGCATTGCTCCTCGAAGTAGCTTGTGGAAGGCCGCCAATTGACCCAAATGCCTCATCCAAATGGGTATTACTGTTGGACTGGGTGAGGGAATGCTGGGCAGCAGGCTGTATAGTTGAGGCGGCTGATCCCAAGCTTGACAATGAATATGCGGTTGAGGAGATGGAACTAGCTTCAACATATTCCACGTATTCCATCGTAGGCAACAGCGTGGCATTATACCATCCACCTAGTAATTTAAAAAATGCCTACTCTGACAACACCCAGTTCATCTTTCAAGGGTTTAAAGGCACTTCCACCGCAAATTTGAGCCTCAATGGTGCTTCCATTATCACTTCAACTGACCCCGAAAGTGGTGGAGGTCACGGGTTCGCCTTTACTGACACCATGTATGTGGGCTTCTCTTCAGCCACGGGCAAGCTAGCAGACTCGCATTACATACTGGGGTGGAGGGGTTTTGGTTGTGTGTACAAGGGAGTGTTACCTACAACCAAAGAGGAGATCGCGGTCAAGAAAATCTCCCACAATTCCAGGCAGGGTATCAAGGAATTCATAATGGAGATAGCGAGTCTAGGACGGATGAAACACAAGCATCTAGAAAGGCCACAACTCATTGTGATGTGTTTTCATATGGCGCATTGCTCTTAG 1437 47.04 MFAGFSSATGKLAGSHYILGWTVCSATTLVLLVIVVFISLYYLQRLKYKDVLEEWELQCSHRFPYRDLFKATKGFKDSEILGSGGFGCVYKGVLPATQEEVAVKKISHNSRQGIREFIMEIASLGRMRHKHLVHLHGWCKHKDELLLVYDFMPNGSLGDILFNHKKSGILSWEQRFSILKGVASALLYLHEEWEQVVVHRDVKANNVLLDADMNARLGDFGLARLYDHGEEACTTHIVGTLGYIAPELSRTGKATTHCDMFSYGALLLEVACGRPPIDPNASSKWVLLLDWVRECWAAGCIVEAADPKLDNEYAVEEMELASTYSTYSIVGNSVALYHPPSNLKNAYSDNTQFIFQGFKGTSTANLSLNGASIITSTDPESGGGHGFAFTDTMYVGFSSATGKLADSHYILGWRGFGCVYKGVLPTTKEEIAVKKISHNSRQGIKEFIMEIASLGRMKHKHLERPQLIVMCFHMAHCS* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9110038 9117001 - Vvi8g302 Vvi8g302 790525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g302 478 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 389 IPR013320 -
Vvi8g302 478 ProSiteProfiles Protein kinase domain profile. 75 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g302 478 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 415 462 - -
Vvi8g302 478 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 29 390 - -
Vvi8g302 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vvi8g302 478 Gene3D Transferase(Phosphotransferase) domain 1 152 327 - -
Vvi8g302 478 SMART serkin_6 75 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g302 478 Pfam Protein kinase domain 75 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g302 478 ProSitePatterns Protein kinases ATP-binding region signature. 81 105 IPR017441 GO:0005524
Vvi8g302 478 PANTHER - 29 390 - -
Vvi8g302 478 PANTHER - 415 462 - -
Vvi8g302 478 SUPERFAMILY Protein kinase-like (PK-like) 60 318 IPR011009 -
Vvi8g302 478 Gene3D Phosphorylase Kinase; domain 1 392 477 - -
Vvi8g302 478 Gene3D Phosphorylase Kinase; domain 1 60 151 - -
Vvi8g302 478 SUPERFAMILY Protein kinase-like (PK-like) 408 462 IPR011009 -
Vvi8g302 478 SUPERFAMILY Concanavalin A-like lectins/glucanases 389 414 IPR013320 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g302 Vvi13g86 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76801 PF00069 Pkinase 1.80E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g302 - - vvi:100252418 629.787