Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g324 ATGAGGAAAAAGGCTGCTACAAAAGCAAAAGGTGGTAAAACAGCAGGCGGCTCTGCCACAGGGGGAGGCGAGAAGGCAGTTCCAGCAGTTGGGACTGAAGCTGAATCTGGTGGTGGTGGTGAAACTGGTGGAAAACTAGTCCATTTTGATGGGCCATTTGTGTTCACAGCCGATGATCTGCTGTGCGCAACAGCAGAGATAATGGGGAAGAGCACTTATGGGACTTCATACAAGGCAACACTGGAAGATGGTAACCAAGTTGCAGTTAAGAGGTTAAGGGAGAAGATTGCAAAAGGCCATAAGGAGTTTGAGACTGAGGTTGCTGCTCTCGGAAAGATCAGACACCCAAATCTCTTAGCTCTCAGAGCTTATTACATGGGACCCAAAGGAGAGAAGCTCCTTGTCTTTGATTACATGCCTAAAGGGAGTCTTTCATCCTTCCTTCACGCTCGTGGGCCTGAAACCGTGATCAGTTGGCCAACAAGGATGAACATAGCCATGGGCATCACGCCCAACACCAATGTTTTTGCCACTGCAGGAGCACTAGGCTACCGAGCACCAGAGCTTTCAAAGATAAAGAAGGCCAATACCAAGAGTGATGTCTACAGCCTTGGGGTAATCATATTGGAACTCTTAACAGGGAAGTCTCCAGGTGAGGAAATGGATGGAGGGGTGGATTTACCCCAGTGGGTAGCATCAATCGTAAAGGAGGAGTGGACAAATGAAGTATTCGACTTGGAGCTGATGAGAGATGCATCAACCACAGGTGATGAGTTGCTTAACACATTGAAATTAGGTCTGCACTGCGTTGACCCTTCGCCTGCTGCACGCCCGGACGTTCAACAAGTTCTCCAGCAACTGGAAGAGATTAAGCCAGACTCAAAATTTGTGGTTCGCTCCAGCCTCCGTTTCCTCTCTCTTGTCTTCTCGCGTTCTCACAATCGCAGTTGTGACATGGACGACCTTCCACTGCAGAAAATACAAATATCGGGGCCAACCCTAGCCTCCATGATCCAACGCTTCTCCACCGCTCTTGGCGACGTGGACGGTCTCCTGTTCGGCCACGTCTCCCACATCGCTCCCTCCTCCCTCTCCGACGACGACCCGCTGGGCTCCTCCTCCGATCCCTCCACCTTCGTCGCTACCGTCTCCGGATTCCTCTGCTCCGGAACCATCGACAGTTTCTACGACTCCTCCGGCCAAGTCAACGTTCTCGCCCTTCGCCGCCTCCTAGCCGACCGCGTCCCCCTTCGCTCCCTCATTGGTTGGTTCTCCGGCCGCCGCCGATCCCCCCTCCGCCCTTCCCTTCGGGAGTCCTCCGTCACCGCCTGTCTCTCCACCAAAGCTCAATTCTCTTTCCCAATCGAAAACTCCCTCTCCAATTTCAGACCTTCTCTCTTCCTCCTATTCGCCTCGCCATTGTCGGATCAAGTCATTCACACGCATGAGTACAAAGCGTACCAGTACTGCCTCTCTTCTCAGACTCTCGAGCCCAAATCAATCGACATCGTCAACATTGGACCCGCATTCCGCGGCCATTACGGTTCGTTTAGCCCTAGTTCTCCCTTCCCTTCGTTGGCCTGTGATTTGAGGGGTTCGCCAATGGCGGAGGACGACACCGATGCGACGCGAGTCTCCAAGGCTCAGGCTCAGCGCGAATTGGATACTTGCGCGGAGGGTGTCCAGATTGGGAGTCTACGTCGGTTGATGGGCTCTGAAGCCACGAATTATACAGCCGGATTGGAGGATTTGTACGAGAAGATGCTAGCCAAGCTGGACAGCTTGGCTCGCCTTGTGGAGAAGACTTCAGCCAAGGTTCATGAGCAGGAAAGTCACAATGTGAAGTTAAGGTACAAAGTTGCTGGCTATGATTGA 1875 52.64 MRKKAATKAKGGKTAGGSATGGGEKAVPAVGTEAESGGGGETGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTSYKATLEDGNQVAVKRLREKIAKGHKEFETEVAALGKIRHPNLLALRAYYMGPKGEKLLVFDYMPKGSLSSFLHARGPETVISWPTRMNIAMGITPNTNVFATAGALGYRAPELSKIKKANTKSDVYSLGVIILELLTGKSPGEEMDGGVDLPQWVASIVKEEWTNEVFDLELMRDASTTGDELLNTLKLGLHCVDPSPAARPDVQQVLQQLEEIKPDSKFVVRSSLRFLSLVFSRSHNRSCDMDDLPLQKIQISGPTLASMIQRFSTALGDVDGLLFGHVSHIAPSSLSDDDPLGSSSDPSTFVATVSGFLCSGTIDSFYDSSGQVNVLALRRLLADRVPLRSLIGWFSGRRRSPLRPSLRESSVTACLSTKAQFSFPIENSLSNFRPSLFLLFASPLSDQVIHTHEYKAYQYCLSSQTLEPKSIDIVNIGPAFRGHYGSFSPSSPFPSLACDLRGSPMAEDDTDATRVSKAQAQRELDTCAEGVQIGSLRRLMGSEATNYTAGLEDLYEKMLAKLDSLARLVEKTSAKVHEQESHNVKLRYKVAGYD* 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9628265 9633445 - Vvi8g324 Vvi8g324 790547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g324 624 SUPERFAMILY Protein kinase-like (PK-like) 66 295 IPR011009 -
Vvi8g324 624 Pfam Protein tyrosine and serine/threonine kinase 66 159 IPR001245 GO:0004672|GO:0006468
Vvi8g324 624 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 3 170 - -
Vvi8g324 624 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 168 295 - -
Vvi8g324 624 MobiDBLite consensus disorder prediction 1 42 - -
Vvi8g324 624 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 3 170 - -
Vvi8g324 624 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 168 295 - -
Vvi8g324 624 Gene3D Transferase(Phosphotransferase) domain 1 60 170 - -
Vvi8g324 624 Pfam Protein kinase domain 175 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g324 624 PRINTS Plant protein family FAM175 signature 319 340 IPR023241 -
Vvi8g324 624 PRINTS Plant protein family FAM175 signature 471 491 IPR023241 -
Vvi8g324 624 PRINTS Plant protein family FAM175 signature 508 528 IPR023241 -
Vvi8g324 624 PRINTS Plant protein family FAM175 signature 559 579 IPR023241 -
Vvi8g324 624 PRINTS Plant protein family FAM175 signature 582 608 IPR023241 -
Vvi8g324 624 PRINTS Protein family FAM175 signature 329 347 IPR023238 -
Vvi8g324 624 PRINTS Protein family FAM175 signature 349 366 IPR023238 -
Vvi8g324 624 PRINTS Protein family FAM175 signature 394 413 IPR023238 -
Vvi8g324 624 PRINTS Protein family FAM175 signature 422 438 IPR023238 -
Vvi8g324 624 PRINTS Protein family FAM175 signature 500 514 IPR023238 -
Vvi8g324 624 ProSiteProfiles Protein kinase domain profile. 62 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g324 624 Gene3D Transferase(Phosphotransferase) domain 1 171 303 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76803 PF00069 Pkinase 2.20E-08 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g324 - K20799 vvi:100267162 547.354