Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g33 ATGGAAGCTCCCGGTGGAAATTACAGGGGGTCTTCGGAGATAGGGAATGGTAATTCGAGAAGATACGGTATGCAGCTATCGGCTTCGAATATCATACAGGCGCCATTGTCGGCGTTGTTGGAGTATTCAGGTCTGCTGCGTGGCCGCTCAAGCCATCAAGAAACGGAGAGTTTGATCTATGGAAGTGTGCGGGATAATGAGGCTTCTGTACAGCAGATTGCGGGGCAGGGGTCGGGGACGGTGACATTGGAGGGTCATGGTCAGGGTCAGGGGGAGTCTAGGGCGGGAGAGGGCATCTCTCAATCGGGAAATGGGAATGGGGATGGGGAAGCTGCTGATGGGGCTGGGGCCAATGGGAGGGATTCGTCTTATCAGAGATACGATATTCAGCAGGCTGCCAGGTGGATTGAGCAGGTGCTTCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAATTCTTCGGAAGCAAACAGCATTGAAGGGAGAGAGGAAAATATCTGTTCTGGTTGGGATCTCTCTTGTGTTCACACTTCACGTTGCTGGTGTTTACTGGTGGTATCATAATGGTGATCTTTTATATCCTTTGATCATGCTGCCTCCAAAAGCTATTCCACCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGTGAGGCAGGCAGCAATGGTTTTCAAGTGTATTCTATTGATGTACTACAAGAACAGCAGAGGCAGAAATTATCGTAAACAGGGTCAACTGCTAACTTTGGTTGAATATACATTACTGTTGTATCGTGCCTTGTTGCCAGCACCTGTCTGGTATCGTTTTTTCTTGAACAAAGAATATGGGAGCCTATTTTCATCACTAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATTATGGAGCTTATGCTACGTCAGAGCAGGTCAATGCAGCTGGGGATCTGTGCGCTATTTGCCAGGAGAAGATGCATGCTCCAATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGGTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGCAGATCTAAGATCATATGGCGATGGATCAACTAGTCTCTTTTTCCAGCTATTCTAA 1257 46.46 MEAPGGNYRGSSEIGNGNSRRYGMQLSASNIIQAPLSALLEYSGLLRGRSSHQETESLIYGSVRDNEASVQQIAGQGSGTVTLEGHGQGQGESRAGEGISQSGNGNGDGEAADGAGANGRDSSYQRYDIQQAARWIEQVLPFTLLLLVVFIRQHLQGFFVTIWISAVMFKSNEILRKQTALKGERKISVLVGISLVFTLHVAGVYWWYHNGDLLYPLIMLPPKAIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQLLTLVEYTLLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSYGDGSTSLFFQLF* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 669744 683491 - Vvi8g33 Vvi8g33 790256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g33 418 MobiDBLite consensus disorder prediction 79 119 - -
Vvi8g33 418 SUPERFAMILY RING/U-box 350 400 - -
Vvi8g33 418 Pfam Zinc finger, C3HC4 type (RING finger) 355 398 - -
Vvi8g33 418 ProSiteProfiles Zinc finger RING-type profile. 357 395 IPR001841 -
Vvi8g33 418 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 70 - -
Vvi8g33 418 ProSitePatterns Zinc finger RING-type signature. 372 381 IPR017907 -
Vvi8g33 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 405 IPR013083 -
Vvi8g33 418 CDD RING-HC_RNFT1_like 356 395 - -
Vvi8g33 418 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 74 418 - -
Vvi8g33 418 SMART ring_2 357 394 IPR001841 -
Vvi8g33 418 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 74 418 IPR044235 GO:0061630|GO:1904294
Vvi8g33 418 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 6 70 IPR044235 GO:0061630|GO:1904294
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g786 Vvi8g33 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g33 - K22379 vvi:100250131 788.489