Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g335 ATGTTCACTCAAGGAGGAAGAAAAGGGATCAATCAAGATGCCATGACTGTTTGGGAGGACTTTTCAGGTGAGAAAGGCATGTTTTTCTGTGCTGTGCTGGATGGACATGGTCCCTCAGGGCACCATGTTGCAGGCCTTTACCCACTATTTCCTTTGTGGAAGGCCAGTTTGATTAAGTCCTTTGAAGAGATGGATGAAGAACTTGGCTCCAATTCCACTTTTGACAGCTTCTGCAGTGGCACAACAGCAGTGACTGTAATCAAACAGGAGGACCATTTGATAATTGCCAACTTGGGGGATTCTCGTGCGGTTCTTTGCACTAGAGGAAACAGAAACCAACTCGTTCCCGTCCAACTCACAGTAGACTTGAAACCAAATCTTCCAAGTGAAGCTGAAAGAATTAAGAATTGCAAAGGCCGGGTATTTGCTTTACCTGATGAATCTGGGGTGTATAGACTATGGATGCCTGATCAAAATTCCCCTGGTCTCGCCATGACAAGGGCTTTTGGAGACTTCTGCTTGAAAGACTACGGCCTTATCTCTATTCCTGACGTTTCTTACAGAAAGCTAACAGACAAGGACGAGTTTGTGGTCCTAGCATCTGATGGGGTATGGGATGTGTTATCAAACTCTGAGGTCACAAGGATAGTTGCTTCAGCTAAGAAGCGGTCCATGGCAGCTCAGCTGTTAGTAGACCGTGCAGTCCGAGAATGGAAGATTAAATATCCGGGCTGCAAGACTGATGATTGTGCAGTCATATGCTTGTTCCTAAAAACCCCACCTTTGTCAACCAAATCCACGTCCAAAAATGGTCGGGATGGTGTGAATAATCACCAGCAGCTTGCAGTGTCTCAACGTTCAGCAACAAGAAGAAGCCAGCAAGGCTGTGAATCTACAAAAGCAAACTCAAAGGAGGAGTATAGTGCTCTTCAAGGAGTCACTAGAGAGAATTCTCTACTCAGTCTTCCTCGGTTTTCCACTGTTCTGGGTAGGCGGAGATCAATCAACCAACCAAGTACGTTAAAGCTGTTTGAACCCATACTGATTTGGATGATCAAGCAGACCCCAGAAGGTCAACCCGTCAAAGAATTTCACCACTGCATCATCTTCCTGCTAGTACTGGGAAGTTCATTGATTAGCGAGATCACGGGAATGCACGGTTTCTTCGGGCCTATGGTGTTGGGGTTGGAAGTACCGGAAGGATCCCCGTTAGCATTTACCTTGGTGGACAGACTGGATTTCTTCTTTTCTTTCGTGATGTTGCCTATCTACTTCATTGTGTGTGGTGGGAGAACAAACTTGACCCGAGTGACTCCTCACACTTGTCTTGTAGTTGAGCTCATGTCCCTGCTTGGTTTCTTGTCTAAGTTTATTGGAACCATCCTGCCTTGTGTCTTCCTCTGCGACATGTTTCTCAGAGACGCAATCACCCTCAGCCTCATACTTAACAACAAAGCCCCTTGCTCTGTTGGGATCATTATCGATCGTGGGGCTTGGCGCGTCACCAAGTCTGTGCTAGGAAGCTGGTCTCTTTTCCGGGTTGGCGTGTTCTTCATAGGCGGAGCCGATGATCGTGAGGCAGTGGCATATGCAATGCGCATGTCTGAACATCCCAATGTTACTGTAACACTAGTGAGGTTCTTACCCTTACAGATGACCATTAATGATCATGATCCAAATGAGAGGAGAATGGATAATGACATGATCAACGAGTTTAAAGTATCAAAGGTAGGAAGTGAAAAGGCTCTGTACAAGGAGGAGATGGTGGTGGACAGTGTGTGTACATGCAGTGGAATTCGATCAATGGAGAACTCTTTTGATCTAATACTAGTTGGCAGACGCCATGAAGAGAATTCCCCCATGGTGTATGGACTAAATGACTGGATGGACTACCCGGAATTGGGATTTCTGGGGGACATACTAGCATCAGAGGATTTCACTGGGAAGGTATCAACATTGGTGATTCAACAGCATAGTTGGGCAGCCGGAGAAGAAAGCTCAAGACATTCAGAGGATAGTCCTAGCCGCCAAGACTCGTTTCTACCTCAGGTGTCCCCCAACGGTCTTAAAGGCTATTGA 2079 46.37 MFTQGGRKGINQDAMTVWEDFSGEKGMFFCAVLDGHGPSGHHVAGLYPLFPLWKASLIKSFEEMDEELGSNSTFDSFCSGTTAVTVIKQEDHLIIANLGDSRAVLCTRGNRNQLVPVQLTVDLKPNLPSEAERIKNCKGRVFALPDESGVYRLWMPDQNSPGLAMTRAFGDFCLKDYGLISIPDVSYRKLTDKDEFVVLASDGVWDVLSNSEVTRIVASAKKRSMAAQLLVDRAVREWKIKYPGCKTDDCAVICLFLKTPPLSTKSTSKNGRDGVNNHQQLAVSQRSATRRSQQGCESTKANSKEEYSALQGVTRENSLLSLPRFSTVLGRRRSINQPSTLKLFEPILIWMIKQTPEGQPVKEFHHCIIFLLVLGSSLISEITGMHGFFGPMVLGLEVPEGSPLAFTLVDRLDFFFSFVMLPIYFIVCGGRTNLTRVTPHTCLVVELMSLLGFLSKFIGTILPCVFLCDMFLRDAITLSLILNNKAPCSVGIIIDRGAWRVTKSVLGSWSLFRVGVFFIGGADDREAVAYAMRMSEHPNVTVTLVRFLPLQMTINDHDPNERRMDNDMINEFKVSKVGSEKALYKEEMVVDSVCTCSGIRSMENSFDLILVGRRHEENSPMVYGLNDWMDYPELGFLGDILASEDFTGKVSTLVIQQHSWAAGEESSRHSEDSPSRQDSFLPQVSPNGLKGY* 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9772719 9780613 - Vvi8g335 Vvi8g335 790558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g335 692 MobiDBLite consensus disorder prediction 662 692 - -
Vvi8g335 692 Gene3D - 1 259 IPR036457 -
Vvi8g335 692 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 45 - -
Vvi8g335 692 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 48 305 - -
Vvi8g335 692 MobiDBLite consensus disorder prediction 264 303 - -
Vvi8g335 692 Pfam Sodium/hydrogen exchanger family 351 483 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vvi8g335 692 SMART PP2C_4 3 255 IPR001932 -
Vvi8g335 692 Pfam Protein phosphatase 2C 53 236 IPR001932 -
Vvi8g335 692 PANTHER ALPHABET, ISOFORM E-RELATED 1 45 - -
Vvi8g335 692 PANTHER ALPHABET, ISOFORM E-RELATED 48 305 - -
Vvi8g335 692 CDD PP2Cc 4 257 IPR001932 -
Vvi8g335 692 Gene3D - 339 495 IPR038770 -
Vvi8g335 692 ProSiteProfiles PPM-type phosphatase domain profile. 1 257 IPR001932 -
Vvi8g335 692 SUPERFAMILY PP2C-like 3 258 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g713 Vvi8g335 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g335 - - vvi:100256885 675.241