Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g338 ATGGATCACAGTGCTCCATTCGCTTGGGCTCTCTCCGATCCTTTAAGTCATACAACCGAATTCCCTAAATTCAAATCCCTCCCTCCCCCTTCACTCCCCATCTCTCCTCCTCCCGTCTCTCCTTCTTCTTACTTTGCGTTTTCATCTGGTTTCAGCTCCACAGACCTCTTGGACTCCCCTCTGCTTCTCTCCTCTTCTAATGTTCTTCCGTCTCCAATCACTGGGAATTTTGCTGCTCCGGGCTTCAACTGGAGGAGTAATTCTAACGAGCACCAGCAGGCTTTCAATGACACAGACAGAAAATTTTCTGATCTCCTTTTCCAGTCCCAAACAAGGCCTTCAGGGGGAGAGGCGTTGAAAACCCAAGCACCATGGAATTCTGATAAACCCGAAAAGCAAACTCATTTCCCACAAGAGAAAACCGGAGTGAAATCAGAATTTGCTTCACTTCAGAGCTTGTCACCGGAAATCGCTTCAATCCAAACCAACATGCAGAGCAACAATATTCCCCAATCTGGCCGGAGCCATCATGCTCAGCCATCTGAGTCTTACAGAGAGCAAAGGAGATCAGACGATGGGTATAACTGGAGAAAGTATGGTCAAAAACAAGTGAAGGGAAGTGAAAATCCGCGTAGTTATTACAAGTGCACGTTTCCAAATTGCCCGACAAAGAAGAAGGTTGAACGATCTTTGGAGGGTCATATTACTGAAATAGTGTACAAGGGAACTCACAGCCATCCTAAGCCTCAGCCCAAGAGATCATCTTCTCAATCATTTCCTTCCGCAAGCACAAACTCGGAAATTTCTGGGCATTCAATGCCAATAGGAAACCCATACATGGATTCTATGACAACGTCTGAGAATTCTTCAGTCTCTATTGGAGAGGATGACTTTGATCAAAACTCTCCAATGAGTAGATCAGGAGGAGATGATGAAAATGAACGGGAGGCCAAAAGATGGAAGGGAGAGTACGAAAATGAGGCAATTTCAGCTTCTGAAAGCAGAACTGTGAAAGAACCTAGAGTAGTGGTTCAAACAACAAGCGACATTGATATTCTTGATGATGGCTATAGATGGAGGAAATATGGGCAGAAAGTAGTCAAGGGAAACCCGAATCCAAGGAGCTACTATAAATGTACGAGTATAGGTTGTCCAGTGAGGAAACATGTGGAGCGATCATCCAAGGATATCAGAGCTGTGCTCACCACATATGAAGGGAAACACAACCATGATGTTCCAGCGGCACGTGGTAGTGGCAGCCATTTTGTGACTAAACCTTTACCAAATAATAGCACCACAACTGTGCCTGCGCCTATAAGGCCCTCAGTCATGACCAACCATTCTAACTACACTACAACTAACGCTAACCCCCAAACAAGGCCACCAACATCAGCAAGTCAAGCACCTTTCACCCTGGAAATGTTGCAGAGCCCGGGGAGTTTTGGATTCTCAGGATTTGGTAGAATGTCTCACCCAGATGGGGTTTTCTCAAGAACCAAGGAAGAGCCTAAGGATGACTTGTTCCAGTCATTTTTTTGCTGA 1542 45.53 MDHSAPFAWALSDPLSHTTEFPKFKSLPPPSLPISPPPVSPSSYFAFSSGFSSTDLLDSPLLLSSSNVLPSPITGNFAAPGFNWRSNSNEHQQAFNDTDRKFSDLLFQSQTRPSGGEALKTQAPWNSDKPEKQTHFPQEKTGVKSEFASLQSLSPEIASIQTNMQSNNIPQSGRSHHAQPSESYREQRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGHITEIVYKGTHSHPKPQPKRSSSQSFPSASTNSEISGHSMPIGNPYMDSMTTSENSSVSIGEDDFDQNSPMSRSGGDDENEREAKRWKGEYENEAISASESRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSIGCPVRKHVERSSKDIRAVLTTYEGKHNHDVPAARGSGSHFVTKPLPNNSTTTVPAPIRPSVMTNHSNYTTTNANPQTRPPTSASQAPFTLEMLQSPGSFGFSGFGRMSHPDGVFSRTKEEPKDDLFQSFFC* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9796055 9798907 - Vvi8g338 Vvi8g338 790561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g338 513 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 487 IPR044810 GO:0003700
Vvi8g338 513 MobiDBLite consensus disorder prediction 249 307 - -
Vvi8g338 513 MobiDBLite consensus disorder prediction 308 333 - -
Vvi8g338 513 MobiDBLite consensus disorder prediction 241 333 - -
Vvi8g338 513 MobiDBLite consensus disorder prediction 110 142 - -
Vvi8g338 513 SUPERFAMILY WRKY DNA-binding domain 186 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 Pfam WRKY DNA -binding domain 191 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 Pfam WRKY DNA -binding domain 354 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 MobiDBLite consensus disorder prediction 409 440 - -
Vvi8g338 513 MobiDBLite consensus disorder prediction 166 196 - -
Vvi8g338 513 Gene3D WRKY domain 177 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 Gene3D WRKY domain 338 414 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 SMART WRKY_cls 353 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 SMART WRKY_cls 190 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 ProSiteProfiles WRKY domain profile. 348 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 MobiDBLite consensus disorder prediction 423 440 - -
Vvi8g338 513 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 17 487 - -
Vvi8g338 513 MobiDBLite consensus disorder prediction 110 131 - -
Vvi8g338 513 ProSiteProfiles WRKY domain profile. 185 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 SUPERFAMILY WRKY DNA-binding domain 345 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g338 513 MobiDBLite consensus disorder prediction 179 196 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g715 Vvi8g338 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15161 PF03106 WRKY 7.60E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g338 K13424 - vvi:109123048 954.125