Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g365 ATGGGGGCGTCCCTGCTCCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCATCGATCCTGCTGGACGACACATCCAACTTCACGGGTGAGAAGACGGCAGGCCCAAATGCAAATTCGGTAAGAGGATATGAGGTGGTGGACACCATTAAATCTCAATTGGAGGCTTCCTGCCCTGGGGTGGTTTCTTGTGCTGACATCTTAGCCGTTGCTGCTCGGGACTCCGTTGTGGCGCTGAGGGGACCTAGCTGGATGGTTAGATTAGGCAGAAGAGACTCGACGACAGCGAGCTTAAGTGCAGCTAATAGTAACATTCCTGCCCCCACTTTGAACCTTAGTGGCCTCATCTCTGCCTTCACAAACAAAGGTTTCAATGCCAGGGAAATGGTGGCTCTGTCAGGGTCTCATACAATAGGGCAAGCAAGGTGCACAACCTTCCGGACTAGGATCTATAATGAAGCCAACATAGATGCCTCATTCAAGACGTCTCTGCAAGCCAACTGTCCAAGCTCTGGGGGTGACAACACCCTCTCTCCACTTGACACCCAAACTCCTACAACTTTTGATAATGCCTACTACACCAATTTGGTGAACAAGAAGGGCCTTCTCCACTCGGACCAACAGCTCTTCAATGGGGGTTCCACGGACGCTGTGGTTAACACATACAGCACCAGGTCGACTACTTTCTTCACAGACTTTGCAAATGCCATGATGGCTTCACGCAGCCTCTTGTGTCTCTATGCCTTTGTGCTGTTTAGTCTTGCCACCGCAGATTTCTCTGCAGCCTTGTCTCCTTATTTTTATAACAAAGTGTGTCCCAAAGCTTTGCCAACCATCAAACGAGTGGTTGAGGCCGCAGTGCAGAAGGAGAAGCGCATGGGTGCTTCTTTGCTTCGTCTCCACTTCCATGACTGTTTTGTTAATGGTTGTGATGCTTCAATTCTCCTAGACGCTACATCCACGATTGACAGTGAAAAGAATGCGGGCGCTAATGCAAATTCTGCAAGAGGATTCAATGTCGTCGACGACATCAAGTCTCAGGTTGACAAAGTCTGCGGACGCCCAGTGGTGTCCTGTGCAGACATCTTGGCTGTTGCAGCACGGGACTCTGTGGTTGCGCTTGGAGGACCATCATGGACTGTACAACTGGGAAGGAGAGACTCGACAACAGCGAGCAGGACAGACGCCAACAACAACATTCCCTCGTGGCCACGTCATAGGATTTGCCCAGTGTAA 1242 50.48 MGASLLRLHFHDCFVNGCDASILLDDTSNFTGEKTAGPNANSVRGYEVVDTIKSQLEASCPGVVSCADILAVAARDSVVALRGPSWMVRLGRRDSTTASLSAANSNIPAPTLNLSGLISAFTNKGFNAREMVALSGSHTIGQARCTTFRTRIYNEANIDASFKTSLQANCPSSGGDNTLSPLDTQTPTTFDNAYYTNLVNKKGLLHSDQQLFNGGSTDAVVNTYSTRSTTFFTDFANAMMASRSLLCLYAFVLFSLATADFSAALSPYFYNKVCPKALPTIKRVVEAAVQKEKRMGASLLRLHFHDCFVNGCDASILLDATSTIDSEKNAGANANSARGFNVVDDIKSQVDKVCGRPVVSCADILAVAARDSVVALGGPSWTVQLGRRDSTTASRTDANNNIPSWPRHRICPV* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10337040 10344443 + Vvi8g365 Vvi8g365 790588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g365 413 CDD secretory_peroxidase 1 239 IPR033905 GO:0004601|GO:0042744
Vvi8g365 413 Pfam Peroxidase 1 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 Pfam Peroxidase 282 405 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PANTHER PEROXIDASE 72-RELATED 1 243 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PANTHER PEROXIDASE 72-RELATED 256 404 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 Gene3D Peroxidase, domain 2 108 240 - -
Vvi8g365 413 Gene3D - 265 410 - -
Vvi8g365 413 ProSitePatterns Peroxidases active site signature. 2 13 IPR019794 GO:0004601
Vvi8g365 413 ProSiteProfiles Plant heme peroxidase family profile. 1 240 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 Gene3D - 1 107 - -
Vvi8g365 413 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Vvi8g365 413 ProSitePatterns Peroxidases active site signature. 296 307 IPR019794 GO:0004601
Vvi8g365 413 ProSiteProfiles Plant heme peroxidase family profile. 264 404 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 SUPERFAMILY Heme-dependent peroxidases 1 240 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PANTHER PEROXIDASE 256 404 - -
Vvi8g365 413 PANTHER PEROXIDASE 1 243 - -
Vvi8g365 413 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Plant peroxidase signature 44 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Plant peroxidase signature 181 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 PRINTS Plant peroxidase signature 197 214 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g365 413 SUPERFAMILY Heme-dependent peroxidases 265 405 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g736 Vvi8g365 ECH
Vvi8g365 Vvi13g133 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g365 K00430 - vvi:100253452 473.781