Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g376 ATGGCGATATCTCCACAAAACTTTCCCAGAAAACGGCGTCCATCCGCCGGATCGTTCATTTCTCCTACCTTATCCGATCGCAGATTGGTTCAATCTCTGCTTCTGGTCTCTCAAGAGATTTCGTCTCTGGCGCCGCTTCAGTTTCTTCTCAAGCGCAATTCCGTTTCAATTATTCGCAAATCTAATCTCCTCGCCTTCCTGTTCGAAGAGCTTCTGCGCAATCCGGTGTCCTGTTTCGCTCCTACGGCTATCCTCTGCTTTGAAGAAATGTATATAGTCTTGCAAAGGATGAAAACATTGATCGAGGATTGTTCCAACGGAAGCAGGACATGGCTTCTCATGCAGAACGAATCGGTTTCCAACGGTTTTCATGAACTCACTCTGGATTTATCGACCTTGTTGGATATTATTCCGGTGAAAGGCCTGGATTTGGTCGAAGATATTGAAGAACTGGTCCTTTTAATCAGAAAACAGTGTTCGGAAACCGCTGCTTATGTAGATCCCACAGATGAAACTCTCAGACGAGATTTACTGAAAATGCTCGATCAGATCAAGAGGGAGATTGTTCCCGATCATAAAAAATTAGCCGAGATATTTGAGAAATTAGATTTACAAGACTCCGCAAGTTGCAGTGATGAGATTAAAAGCCTTGAAGAAGAGTTTCAGAATCAAAGGGATGACAAAAGCAAATCTGAAGTCACAGCATTGATCGGCCTGGTCCGTTACGCCAAGTGCGTTCTCTTCGGAGCATCCACGCCCAAGTCCCACGGTCGGCGGCAAAAATCCATGACGGACACAATTATACCGGCCGACTTCCGGTGTCCGATCACTCTCGACCTGATGCGGGACCCAGTAGTCGTGGCAACGGGACAGACGTATGATCGGACATCGATCAATCGCTGGATCGAATCTGGACACAACATGTGTCCCAAGACAGGTCAGATCCTAGCCCACACAAACCTAATCCAAAACCGCGCTCTCAGGAACCTCATCATACTATGGTGCCGGGAGCAAGAAATTCCATTCCAAACAACGGAAGTCAACGACAAAGTTAAAGCCGCCACGCAAAACAAAACGCTTTTCGGCGCCACGAAGATGACCGTGTTATTTCTCATCAACAAGTTAACCGATTCAGAGTCGGTGGAGGCCACGAATCGCGTGGTTCACGAGCTTCGCGTACTCGCCAAGACAGATTCGGAGAGCCGAGCCTGCATTGCCGAAGCAGGAGCTATACCTTTGCTGGTGAGGTTCTTGGGTTCTGACAACCCAAGCCTCCAGGTCAACGCCGTCACAACGCTCCTCAACCTTTCCATCCTGGAAGCCAACAAGACCAGGATAATGGAAATAGATGGAGCTCTGAACGGCGTCATCGAGGTGCTGAGATCAGGTGCCACGTGGGAGGCGAAGGGCAACGCGGCAGCCACCATATTTAGCCTAGCTGGAGTGCAGTCGTATAGGAAGAGATTGGGGAAGAAGACGCGCGTCATAAAGGGGTTAATCGAAGGAGGAGTGGTGGAGATGGTCATTGAAGTAATGGCAGCATCACCGGAGGAGGCTGAGGAGGCTGTGACTGTACTGGAGGTGGTGGTGCGGAGAGGTGGATTAGTGGCAGTTGCTGCAGCTTACCATGCAATCAAGAAACTGAGTGTGGTGTTGAGGAGCGGATCGGACAGAGCAAGAGAGAGTGCCGCGGCCACGCTTGTTAATATTTGTAGAAAAGGAGGGTCGGAGACGGTGGCAGCGCTTGCGGCAATGCCAGGAATAGAGAGAGTGATATGGGAGTTGATGGGAACTGGAACTGAGAGATGTAGAAGGAAAGCAGCGTCGTTGTTGAGAATGCTCCGGAGATGGGCAGCTGGGTTGGATGAGGATGTACCCACTACCACTGGCCACTCCACCACTGTAACCACTACCTCCAGGCCAAAAATATCCAGCAAACTCACCTGA 1947 49.92 MAISPQNFPRKRRPSAGSFISPTLSDRRLVQSLLLVSQEISSLAPLQFLLKRNSVSIIRKSNLLAFLFEELLRNPVSCFAPTAILCFEEMYIVLQRMKTLIEDCSNGSRTWLLMQNESVSNGFHELTLDLSTLLDIIPVKGLDLVEDIEELVLLIRKQCSETAAYVDPTDETLRRDLLKMLDQIKREIVPDHKKLAEIFEKLDLQDSASCSDEIKSLEEEFQNQRDDKSKSEVTALIGLVRYAKCVLFGASTPKSHGRRQKSMTDTIIPADFRCPITLDLMRDPVVVATGQTYDRTSINRWIESGHNMCPKTGQILAHTNLIQNRALRNLIILWCREQEIPFQTTEVNDKVKAATQNKTLFGATKMTVLFLINKLTDSESVEATNRVVHELRVLAKTDSESRACIAEAGAIPLLVRFLGSDNPSLQVNAVTTLLNLSILEANKTRIMEIDGALNGVIEVLRSGATWEAKGNAAATIFSLAGVQSYRKRLGKKTRVIKGLIEGGVVEMVIEVMAASPEEAEEAVTVLEVVVRRGGLVAVAAAYHAIKKLSVVLRSGSDRARESAAATLVNICRKGGSETVAALAAMPGIERVIWELMGTGTERCRRKAASLLRMLRRWAAGLDEDVPTTTGHSTTVTTTSRPKISSKLT* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10460852 10467862 + Vvi8g376 Vvi8g376 790599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g376 648 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 499 632 - -
Vvi8g376 648 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 10 501 - -
Vvi8g376 648 SUPERFAMILY RING/U-box 259 341 - -
Vvi8g376 648 SMART arm_5 398 438 IPR000225 GO:0005515
Vvi8g376 648 SMART arm_5 492 531 IPR000225 GO:0005515
Vvi8g376 648 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Vvi8g376 648 MobiDBLite consensus disorder prediction 626 648 - -
Vvi8g376 648 Gene3D - 351 620 IPR011989 -
Vvi8g376 648 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Vvi8g376 648 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Vvi8g376 648 CDD RING-Ubox_PUB 272 314 IPR045210 -
Vvi8g376 648 Coils Coil 207 234 - -
Vvi8g376 648 MobiDBLite consensus disorder prediction 625 648 - -
Vvi8g376 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Vvi8g376 648 SUPERFAMILY ARM repeat 370 614 IPR016024 -
Vvi8g376 648 Pfam U-box domain 268 339 IPR003613 GO:0004842|GO:0016567
Vvi8g376 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 350 IPR013083 -
Vvi8g376 648 PANTHER U BOX DOMAIN-CONTAINING 10 501 - -
Vvi8g376 648 PANTHER U BOX DOMAIN-CONTAINING 499 632 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g376 - - vvi:100256780 1154.43