Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g379 ATGAATAATACTCGGTTGGGAGAATGTCGAGGTGGAGCGAGGCAACAATTTGGATACGTTGAGACCGATCCATCTGGTCGGTATGGGCGTTTCAGGGAAATTCTTGGCAAAGGAGCAATGAAGACAGTGTACAAGGCATTCGACGAGTTCCTTGGCATGGAGGTGGCTTGGAATCAGGTGAAGCTGAACGATGTCTTCAATTCACCCGACGATTTGCAGCGACTCTACTCTGAGGTTCACCTCCTCAAGAACCTCGATCATGACTCCATAATGCGATTCCACACATCTTGGATCGACCTTGATGGAGGAACCTTCAACTTCATCTCTGAAATGTTTACCTCTGGCACCCTCAGAGAGTATAGACAAAAGTACAAGCGGGTTGACATTGGAGCTGTTAAGAACTGGGCACGCCAGATTCTACATGGGCTTGCTTATCTGCACGGCCATGACCCTCCGGTGATCCACAGAGACCTCAAGTGCGATAACATCTTTGTGAATGGTCATCTTGGACAGGTCAAGATTGGTGATCTAGGCTTAGCAGCTATTCTTCGGGGTTCCCAACACGCCCACAGCGTCATAGGTACACCGGAGTTCATGGCACCGGAATTATATGAAGAAGAGTACGACGAGCTTGTAGATGTATACTCCTTTGGCATGTGTGTGTTAGAGATGCTTACATCAGAGTACCCATATTGCGAATGCTCCAATCCTGCTCAGATATACAAGAAAGTGACTTCGGGAAAGCTACCAGAAGCATTCTACAGGATTGAAGATGTTGAGGCAAGGGAATTTGTGGGAAGATGTTTAGAGCATGTTGCAAAGAGGTTGCCTGCCAAAGAGCTCTTGATGGACCCTTTTCTAGCAGTGGACCATGGAGAGCAGATGTTGCCCATGCTAAAGATATCGAGTCAGAAGCCAAGTCCTAATGGAACAGTGGAGAAGATACCATCTTTCCAGACTAATCCTAGGAAAAGGAGTACAGATATGACGATCACAGGCACCATAAATCCGGATGACTATACAATTTTTCTTAAAGTGGCAATCTCTGATAAAGATGGTCTTTCAAGGAACATTTACTTTCCCTTTGACATTGGAAGTGACACTCCAATAGACGTTGCAGCTGAGATGGTGAGGGAATTGGAAATCACAGATTGGGAGCCATTTGAGATAGCCAAGATGATTGAGGAGGAGATTTTTGCTTTGGTTCCAAGTTGGAAGCAATGTACCTCACCTGAAAATCATCAGCATAGCTTCGAATATGAAGAAGAAGAAGAAGAAGAAGATGATGACGACGAAACTTACCATCCTTTCTACTGTTATGCCTCTGAGTCCTCTCGGGTTGCTCTCCAAGATCTCAGCATTTCATGTGAGATCCAATCTCAACATAGGAACCATATGATTTCCGGCGAGGACTGGTTTCAAGAAGGTTTGCTCATCAATGACGATGCAAGTTCTCAAAGCTCCTTAAACTCCGACAAGTACTCCACTTTAGTTTACTGCTCAGTCACTGAAAATGATATTGATCACCTAGCTCCCAAAAGAGTAGAGCCCATCTTCACTGCAAGTACCCACAAGTCCACTAGGTTCTGCCCTGAAGAAGGCACGAGTAGCTGGAACCAATGCAATGGTTCGCGGAGACCATATGACTCAAATTGTCATCGGAAATTAAGCAGGATAAAATCATTTGTGGATGTGCGCAGCCAGCTGTTGCGGCGGTCTCTAATGGAGATGATAAACAAACGGCGATTGTTCAAAACCATCGGAGCTGTTGAGAACATCGGGTATCAAGAACCAGGCAAGTTTCCCAAAGAGATGTCAATGACTGGTGGTTTGTCTGGGAACTCTCCCAGAAACAGTGAAAAGCAGAGATTTAAATGCTGA 1881 45.4 MNNTRLGECRGGARQQFGYVETDPSGRYGRFREILGKGAMKTVYKAFDEFLGMEVAWNQVKLNDVFNSPDDLQRLYSEVHLLKNLDHDSIMRFHTSWIDLDGGTFNFISEMFTSGTLREYRQKYKRVDIGAVKNWARQILHGLAYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYDELVDVYSFGMCVLEMLTSEYPYCECSNPAQIYKKVTSGKLPEAFYRIEDVEAREFVGRCLEHVAKRLPAKELLMDPFLAVDHGEQMLPMLKISSQKPSPNGTVEKIPSFQTNPRKRSTDMTITGTINPDDYTIFLKVAISDKDGLSRNIYFPFDIGSDTPIDVAAEMVRELEITDWEPFEIAKMIEEEIFALVPSWKQCTSPENHQHSFEYEEEEEEEDDDDETYHPFYCYASESSRVALQDLSISCEIQSQHRNHMISGEDWFQEGLLINDDASSQSSLNSDKYSTLVYCSVTENDIDHLAPKRVEPIFTASTHKSTRFCPEEGTSSWNQCNGSRRPYDSNCHRKLSRIKSFVDVRSQLLRRSLMEMINKRRLFKTIGAVENIGYQEPGKFPKEMSMTGGLSGNSPRNSEKQRFKC* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10519383 10524077 - Vvi8g379 Vvi8g379 790602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g379 626 ProSiteProfiles Protein kinase domain profile. 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g379 626 MobiDBLite consensus disorder prediction 599 626 - -
Vvi8g379 626 CDD STKc_WNK 27 287 - -
Vvi8g379 626 SMART serkin_6 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g379 626 Gene3D Transferase(Phosphotransferase) domain 1 112 293 - -
Vvi8g379 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Vvi8g379 626 MobiDBLite consensus disorder prediction 302 331 - -
Vvi8g379 626 Pfam Protein kinase domain 33 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g379 626 Gene3D Phosphorylase Kinase; domain 1 14 110 - -
Vvi8g379 626 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 598 - -
Vvi8g379 626 SUPERFAMILY Protein kinase-like (PK-like) 31 288 IPR011009 -
Vvi8g379 626 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 1 598 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g751 Vvi8g379 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76806 PF00069 Pkinase 7.40E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g379 K08867 - vvi:100263648 1263.44