Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g380 ATGGGCGATCTTCGGGCTTGTTCGCCCGAACCCCGCGGCTTGTTTACCGACGATCGCCTGCTGCCGTTGCCGTCGTTGTCGCATCCAAATCCGCCGGCAATTGGCGCGGCCCAGTGGGCGAGAGCGGAGAATACGGTGCAGGAGATTATATGTGAGGTTCAGCCCACTGAGGTGTCGGAGGAGCGAAGAAAAGAGGTTGTTGATTATGTTCAGGGCCTGATCAGAGTTCGTGTTGGGTGCGAGGTCTTTCCATTTGGGTCGGTACCATTAAAGACCTATCTTCCTGATGGAGATATTGATTTGACTGCCTTTGGTGGACCGGCTGTTGAGGATACTTTGGCGTATGAAGTATATTCCGTACTTGAAGCGGAAGATCAGAATAGGGCTGCAGAGTTCGTAGTAAAGGATGTTCAGTTAATTCATGCGGAGGTTAAGCTCGTGAAATGCCTGGTGCAGAATATTGTTGTAGATATCTCCTTCAATCAGTTAGGAGGGCTTTGTACACTATGCTTTCTTGAGCAGATCGATCGCCTCATCGGAAAAGACCATCTATTTAAACGCAGTATTATACTGATTAAGGCTTGGTGCTACTATGAGAGTCGTATTCTTGGTGCTCATCATGGCTTGATTTCTACATATGCTTTGGAGACATTGGTTTTATACATCTTCCTTCTCTTCCACTCTTTGTTAAATGGTCCTTTAGCGGTTCTATATAAATTTCTGGACTACTTTAGCAAATTTGATTGGGATAACTACTGCGTCAGTTTAAATGGTCCAGTCCGCATATCCTCATTGCCAGAAATGATAGCTGAAACACCTGAAAATGTTGGGGCTGATCCATTGCTTAACAATGATATTCTTAGGGACTGCCTTGACAGGTTCTCTGTTCCATCAAGAGGACTTGAGACAAATTCACGAACATTTGTCCAAAAGCATTTTAACATAGTTGATCCACTAAAAGAAAATAACAACCTTGGCCGCAGTGTCAGCAAAGGAAACTTCTACCGGATAAGGAGTGCTTTCACATATGGGGCTCGAAAGCTTGGAAGGATCCTTTTGCAACCAGAAGATAAAATTAGTGAGGAACTTTGTAAGTTTTTCACCAACACTTTGGAGAGGCATGGAAGAGGTCAAAGACCTGATGTAGATCTTATTCCATTGGATGCTGAGCGATCGATGTGTGATGGAGTAAATTTGGTTCCCACTTCAATGTTGTCAGAAGCTGACAATTCCTCAAATGCACCTGCTGTTTCAGGATTCCGTATTTCCGGGGATGCAAAAGATCTTGCTAGCCCCAGAATTAGAGGTCCTAAAATTTCAAATGATACATCTAAATCTTCCCCACCAAGTGGTGAGGAGAGTGTTTCTGTGTTGAGTAAAAAGGCACATTTTGCACCCCATCTCTATTTCTCCCGATCTGCACAAAATGGGAAGGAGAGAAACGAAAACTTGGATAAAAAACTGGCAGGGAACTCTGGTCTTTCTGAGGAAGAATCGAGCTTTGTTGTACATCATGGGCTGAATGGGAATCAGTCTGTTAATAATCATGAGTTGTTGAATTCTTTTGTATCAAATGATGTCCCTCCAGGCTTAAGCCCTACTGCATGCTCCTCAGAATATTTACATACGGGTAACTGGGATAGGCCCTCAAGTGGCAATTCTGGAAATCCTGAAGCTCCCAACTCCTTGGCAGATCTTAGTGGGGATTATGACAGTCACTTTAATAGTTTGCAATATGGTTGGTGGTGCTACGATTATATCTTTGGAGCGCCTGCTCTATCCATGCCTGTAGCATTGCCATCTCAATTCCAGAGCAATAATTCATGGGATGCGATCCAGCAGTCAGCACACATCAGGCGGAATATATTTCCACAAATAACTGCAAATGGTATTATTCCAAGACCACCATTCTACCCGTTGAACCCACCTATGATATCTGGTACTGGGTTTGGTGTGGAAGAGATGCCAAAGCCACGAGGAACAGGGACTTACTTTCCAAATACGAGCCATCATCTATGCAACCCCTTAACATCAAGGGGACGGAATCAGGCACCAGTGAGGTCTCCTCGTCACAGTGGCAGGGCTGTGACACCCCATGAGACAAACTTCCTGGAGAGAAGCAGCCGCGAGCTGTCACATGCGCAATTTCCTGTTCATCAAGGTAATGGGAAGTCTGGGTCTTTGGATTCTCACCCATCTGGTTCCCCTGTAGGGAGGACATACTCCAATGCCAATGGTTCATTGCTCCCTTCTGAGAAAGTGGTTGAGTTTGGAGATCAAGCATCAGAATCACCCTTGCCAGAAAATATCAGGGAACCAAATCATGGCTCTTTTCTCCCTCAAAACTCTAGCCTGAGCCTTTCACCTGGTGGGGCACAAAGGCCAAAATCTATGTTGAGCATGAATGATGATAGGGTCGCAGTTCAGGCATACCACCTGAAGGATGAGGATGATTTCCCACCTTTATCTGTGTGA 2475 45.21 MGDLRACSPEPRGLFTDDRLLPLPSLSHPNPPAIGAAQWARAENTVQEIICEVQPTEVSEERRKEVVDYVQGLIRVRVGCEVFPFGSVPLKTYLPDGDIDLTAFGGPAVEDTLAYEVYSVLEAEDQNRAAEFVVKDVQLIHAEVKLVKCLVQNIVVDISFNQLGGLCTLCFLEQIDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFLLFHSLLNGPLAVLYKFLDYFSKFDWDNYCVSLNGPVRISSLPEMIAETPENVGADPLLNNDILRDCLDRFSVPSRGLETNSRTFVQKHFNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGRILLQPEDKISEELCKFFTNTLERHGRGQRPDVDLIPLDAERSMCDGVNLVPTSMLSEADNSSNAPAVSGFRISGDAKDLASPRIRGPKISNDTSKSSPPSGEESVSVLSKKAHFAPHLYFSRSAQNGKERNENLDKKLAGNSGLSEEESSFVVHHGLNGNQSVNNHELLNSFVSNDVPPGLSPTACSSEYLHTGNWDRPSSGNSGNPEAPNSLADLSGDYDSHFNSLQYGWWCYDYIFGAPALSMPVALPSQFQSNNSWDAIQQSAHIRRNIFPQITANGIIPRPPFYPLNPPMISGTGFGVEEMPKPRGTGTYFPNTSHHLCNPLTSRGRNQAPVRSPRHSGRAVTPHETNFLERSSRELSHAQFPVHQGNGKSGSLDSHPSGSPVGRTYSNANGSLLPSEKVVEFGDQASESPLPENIREPNHGSFLPQNSSLSLSPGGAQRPKSMLSMNDDRVAVQAYHLKDEDDFPPLSV* 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10534424 10550169 - Vvi8g380 Vvi8g380 790603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g380 824 MobiDBLite consensus disorder prediction 662 685 - -
Vvi8g380 824 MobiDBLite consensus disorder prediction 775 795 - -
Vvi8g380 824 CDD NT_PAP_TUTase 62 168 - -
Vvi8g380 824 Gene3D - 164 365 - -
Vvi8g380 824 SUPERFAMILY PAP/OAS1 substrate-binding domain 184 353 - -
Vvi8g380 824 MobiDBLite consensus disorder prediction 542 561 - -
Vvi8g380 824 MobiDBLite consensus disorder prediction 761 798 - -
Vvi8g380 824 MobiDBLite consensus disorder prediction 428 458 - -
Vvi8g380 824 MobiDBLite consensus disorder prediction 655 746 - -
Vvi8g380 824 MobiDBLite consensus disorder prediction 713 746 - -
Vvi8g380 824 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 401 823 - -
Vvi8g380 824 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 27 383 - -
Vvi8g380 824 Gene3D Beta Polymerase, domain 2 55 163 IPR043519 -
Vvi8g380 824 MobiDBLite consensus disorder prediction 542 562 - -
Vvi8g380 824 PANTHER - 27 383 - -
Vvi8g380 824 PANTHER - 401 823 - -
Vvi8g380 824 SUPERFAMILY Nucleotidyltransferase 24 203 IPR043519 -
Vvi8g380 824 MobiDBLite consensus disorder prediction 437 454 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g380 Vvi13g148 ECH
Vvi6g752 Vvi8g380 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g380 - - vvi:100258499 1630.54