Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g383 ATGGCCCCCCAGTTAACAATTGATGAGAATCTTCTTGTTGATCCAAAATTAATTTTTATCGGATCGAAAGTTGGTGAAGGAGCACATGGGAAAGTTTATGAAGGAAGGTATGGTGATCAAATTGTTGCTATCAAAGTTCTCCACCGTGGAAGCACTTCAGAAGAAAGAGCTGCACTTGAGGGACGTTTTGCCCGGGAAGTTAATATGATGTCAAGAGTAAAACATGAGAATCTTGTCAAGTTTATTGGAGCTTGTAAGGATCCTTTAATGGTGATAGTTACAGAGCTATTACCAGGTATGTCACTTCGGAAGTATTTAACCAGTATTCGTCCAAAACGGATGGACATTCATGTTGCATTAAGTTTTGCTCTTGACATTGCTCGAGCCATGGAGTGTTTGCATGCCAATGGGATTATACATAGAGATCTTAAACCTGACAATTTGTTGCTTACGGCCAATCAGAAATCTGTAAAGCTTGCAGATTTTGGTCTTGCAAGGGAAGAATCTGTGACTGAGATGATGACCGCAGAAACTGGGACATACCGTTGGATGGCTCCCGAGCTGTACAGCACTGTGACATTGCGTCAGGGTGAGAAGAAGCATTATAATAACAAGGTTGATGTCTACAGCTTTGGGATTGTCTTCTGGGAATTATTGACCAATCGCATGCCATTTGAAGGCATGTCAAATTTGCAGGCCGCTTATGCTGCTGCATTTAAGCAAGAGCGCCCTAGTCTTCCAGAAGACATATCCCCTGATCTTGCATTTATCATACAATCTTGTTGGGTTGAGGACCCTAACATGCGACCCAGCTTCAGCCAGATCATCCGCATGCTGAACACATTTCATTTCAAAGTCACACCACCTCCATCATCATTACTAGAAGAATCTGACACCAATGGAGCAGCAATGTCTAGCAATGGTACCATGACCGAGTTGTCCGCACGTACGAGAGGGAAGTTTTCTTTCCTTCGCCAACTTTTTGCTGCAAAGAGGACAAGGAATTCACAGTGA 1014 43.1 MAPQLTIDENLLVDPKLIFIGSKVGEGAHGKVYEGRYGDQIVAIKVLHRGSTSEERAALEGRFAREVNMMSRVKHENLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKRMDIHVALSFALDIARAMECLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVFWELLTNRMPFEGMSNLQAAYAAAFKQERPSLPEDISPDLAFIIQSCWVEDPNMRPSFSQIIRMLNTFHFKVTPPPSSLLEESDTNGAAMSSNGTMTELSARTRGKFSFLRQLFAAKRTRNSQ* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10650327 10661181 + Vvi8g383 Vvi8g383 790606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g383 337 Gene3D Transferase(Phosphotransferase) domain 1 100 313 - -
Vvi8g383 337 ProSiteProfiles Protein kinase domain profile. 18 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g383 337 CDD STKc_MAP3K-like 24 279 - -
Vvi8g383 337 ProSitePatterns Protein kinases ATP-binding region signature. 24 45 IPR017441 GO:0005524
Vvi8g383 337 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g383 337 Pfam Protein tyrosine and serine/threonine kinase 20 279 IPR001245 GO:0004672|GO:0006468
Vvi8g383 337 PRINTS Tyrosine kinase catalytic domain signature 94 107 IPR001245 GO:0004672|GO:0006468
Vvi8g383 337 PRINTS Tyrosine kinase catalytic domain signature 132 150 IPR001245 GO:0004672|GO:0006468
Vvi8g383 337 PRINTS Tyrosine kinase catalytic domain signature 206 228 IPR001245 GO:0004672|GO:0006468
Vvi8g383 337 PRINTS Tyrosine kinase catalytic domain signature 250 272 IPR001245 GO:0004672|GO:0006468
Vvi8g383 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vvi8g383 337 SUPERFAMILY Protein kinase-like (PK-like) 16 292 IPR011009 -
Vvi8g383 337 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 4 315 - -
Vvi8g383 337 PANTHER SERINE-THREONINE PROTEIN KINASE 4 315 - -
Vvi8g383 337 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76807 PF07714 PK_Tyr_Ser-Thr 3.10E-60 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g383 - - vvi:100244846 669.848