Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g386 ATGGCCGTCAAAGCAATAATCCATATTCTGTTGCCTCTTGTCTTCTTCCTTGTCTTCAGTTCATTTGTCCCAAGAATTTACAGTGACGGTGGTGGGTGGCAGAATGCCCACGCCACATTCTACGGCAACCAAGATATGGGGGGAGCATGTGGATATGGTGCCGCTACGAGCTACGGTCCCTACACCGCAGCACTAAGCAATGCTCTATTCAACGATGGGTACAGCTGCGGGTCGTGTTATGATAAACCTAATGACAACGGTGGGTGGTGCAACCCCCCTCTCCAACACTTCGACTTGTCGGAGCCTGCCTTCTTGAAGATCGCGCAGTATAAGGCTGGGATAGTTCCGGTACTGTACAGAAGGGTTTCGTGTGCTGTGCAAGGAGGCATAAGGGGATGTCCGAGCCGTCTCCATTAA 417 51.56 MAVKAIIHILLPLVFFLVFSSFVPRIYSDGGGWQNAHATFYGNQDMGGACGYGAATSYGPYTAALSNALFNDGYSCGSCYDKPNDNGGWCNPPLQHFDLSEPAFLKIAQYKAGIVPVLYRRVSCAVQGGIRGCPSRLH* 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10683309 10683967 - Vvi8g386 Vvi8g386 790609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g386 138 Gene3D - 22 125 IPR036908 -
Vvi8g386 138 SMART dpbb_1 62 119 IPR007112 -
Vvi8g386 138 PANTHER EXPANSIN 14 81 - -
Vvi8g386 138 PANTHER EXPANSIN 81 131 - -
Vvi8g386 138 PANTHER EXPANSIN-A15 81 131 IPR002963 GO:0009664
Vvi8g386 138 PANTHER EXPANSIN-A15 14 81 IPR002963 GO:0009664
Vvi8g386 138 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 129 IPR007112 -
Vvi8g386 138 Pfam Lytic transglycolase 92 119 IPR009009 -
Vvi8g386 138 SUPERFAMILY Barwin-like endoglucanases 14 131 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g757 Vvi8g386 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g386 - K20628 vvi:100267155 246.514