Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g394 ATGGCATCGAAAACTTGCGCGAACGTGTCGTGCCCCGGGGCGTCGTCGGGGTCGACGATCGAGTGGAGAAAAGGTTGGGCTTTGCGATCTGGTGATTTCGCCATTCTCTGCGATAAGTGCGGGTCTGCTTTTGAGCAACTAGTTTTCTGTGACATGTTTCACTCAAAGGACTCTGGTTGGAGGAAATGTACTGCATGTGGCAAGCGTCTCCATTGTGGATGCATTGCTTCCAGGTCTCTGCTTGAGCTACTTGATAGTGGTGGCGTAAATTGTATTAACTGCATAAGAAGTTCAGGACCTCACCCTATGACAGGTGATGAAAAGGCTAATGAAAGTGGTGCAATGACAGTGGATAATGTGGGTGAAATTCGTTGCACTTCTGTGGACAATCAATTAGATGGTGGTAGTGTTGAGAAGATGAAGCTTACACAGTTGGGGAATGATACATCGGGTGATGGACTGAAAAACTTTCTTCAATCTGGAAATGACAACATAAATGGGTCTCTTGGCCAAATGAAACAGGAGGAAGTTTTGCCACCTCAGGGAGAAACTGCAAACATGATGGTCAAAGATATACATGAGTCTCTGGTTCAGACAAATTTGAGTATCACCTTGGGTGCTCCTTCAGGAAATCCAAATGTGTTTCCTAGTGCAGTCGTTGAAGAAAGGGAACAACACAAAACATCCACTCCCATCCAACAGGGGCCTAGGTCTCGCCATCTTTTGCCCAAGCCCCCAAGGTCAGCACTTTCTCCTGTTTTGGAAACAAATACAGGTATAGTTCCACAAATACGTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGACTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATCTCTCAACCAGAGGGCCTTCCTTTAAGGATTCAGGATGTGAAGGGGAAAGAATGGGTGTTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGTAACATTCAGCCGTATGGATCCAGAAGGAAAACTTGTTATGGGGTTCCGGAAAGCATCTAACTCCGTTTCCATGCAGGACACCCAACTATCTGCCATTCCTAATGGCGCTCATTCAAGTGAAACTTTCTTTTCGGGTGTTATTGAGAACCAACCTATAATAAGTGGTTACTCTGGCATTCTTCAGTCGCTGAAGGGAAGCACAGATCCCCATCTAAATGCATTGTCAAAACATTTGAATTCAGCTAGTGGGGATATTGGCTGGCATAAAACAGAGAAGCATGGAGGCAAGACAAGAGAGGGCTTGCTGCTTCCATCAATGCTGGTACCAGAGAAGAAGAGAACTCGAACAATTGGGTCTAAAAGTAAGAGATTGCTAATCGATGGCCAAGATGCTCTGGAGCTGAGGCTTACATGGGAAGAGGCACAGTCTTTGCTCCGCCCACCCCCAAGTGTCAAGCCAGTCATTGACGTGATTGAGGACTACGAATTTGAGGCATACACTGAACCCCCTGTTTTTGGAAAGAGGAGTATTTTCACAACCCTCCCATCTGGGGGAGAGGAGCAATGGGTTCAGTGTGATAGTTGCTCTAAATGGCGAAAGGTGCCCCATGATTATCTTGTTCCATGTCAGTGGACGTGTGCTGAAAATTTGTGGGATCAAAGCAGGTGTTCATGTTCTGCCCCAGATGAGTTGAGCCCTAGGGAACTCGAACATATTCTCAGACAATATAAGGATTTCAGAAAACGTCGAATTGCAGCAGTTCATAGGCCTGCACAGGAGCATGAACCTTCCGGCCTAGATGCTCTGGCCAATGCTGCAGCCCTTGGAGATGACATGAGCGACCCAGCCGCTACATCAGTTGCAACCACAACCAAACACCCGAGGCATCGCCCAGGCTGCTCATGCATTGTGTGTATCCAGCCCCCCAGTGGGAAGGGCAAGCACAAGCCCACCTGCACATGCAATGTATGTATGACAGTTAAACGTCGTTTTAAAACACTAATGATGCGGAAAAAAAAGCGCCAATCAGAGCGTGAAGCAGAGATTGCCCAGATAAATCACAATATCTGGGGCGCTAAGGATGAAGCAGAAGTGGACAGCACCTCAAGACTTGCCACTCCAAATCCTGACCCTTCGGAGATGGGATCAAACCGAGTGAGCATGATGAGTCTTCTACAAGTGGCAAGTCTTCCTTTGGAAACATATCTGAAGCAGAATGGTCTCAAAAGCTTGGCCGAGCAACAAGGCAGCTCAGGATCACATGTGCCACCACCACAAGCTACTGGAGAGAGTGAAGGACCACTAAATGAGGATCATTGTATTACTGCTCCTGCAGTTTCAGAGCGAGAGAATGGGGGAGATGAGGAGCACTCTGGACAAGATCAAAGCAAAAATGATGCTTAA 2571 47.1 MASKTCANVSCPGASSGSTIEWRKGWALRSGDFAILCDKCGSAFEQLVFCDMFHSKDSGWRKCTACGKRLHCGCIASRSLLELLDSGGVNCINCIRSSGPHPMTGDEKANESGAMTVDNVGEIRCTSVDNQLDGGSVEKMKLTQLGNDTSGDGLKNFLQSGNDNINGSLGQMKQEEVLPPQGETANMMVKDIHESLVQTNLSITLGAPSGNPNVFPSAVVEEREQHKTSTPIQQGPRSRHLLPKPPRSALSPVLETNTGIVPQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLVMGFRKASNSVSMQDTQLSAIPNGAHSSETFFSGVIENQPIISGYSGILQSLKGSTDPHLNALSKHLNSASGDIGWHKTEKHGGKTREGLLLPSMLVPEKKRTRTIGSKSKRLLIDGQDALELRLTWEEAQSLLRPPPSVKPVIDVIEDYEFEAYTEPPVFGKRSIFTTLPSGGEEQWVQCDSCSKWRKVPHDYLVPCQWTCAENLWDQSRCSCSAPDELSPRELEHILRQYKDFRKRRIAAVHRPAQEHEPSGLDALANAAALGDDMSDPAATSVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQINHNIWGAKDEAEVDSTSRLATPNPDPSEMGSNRVSMMSLLQVASLPLETYLKQNGLKSLAEQQGSSGSHVPPPQATGESEGPLNEDHCITAPAVSERENGGDEEHSGQDQSKNDA* 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10751371 10767781 - Vvi8g394 Vvi8g394 790617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g394 856 MobiDBLite consensus disorder prediction 749 773 - -
Vvi8g394 856 ProSiteProfiles B3 DNA-binding domain profile. 307 408 IPR003340 GO:0003677
Vvi8g394 856 Pfam CW-type Zinc Finger 577 619 IPR011124 GO:0008270
Vvi8g394 856 SUPERFAMILY DNA-binding pseudobarrel domain 304 406 IPR015300 -
Vvi8g394 856 MobiDBLite consensus disorder prediction 226 252 - -
Vvi8g394 856 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 805 - -
Vvi8g394 856 MobiDBLite consensus disorder prediction 838 856 - -
Vvi8g394 856 Gene3D - 571 621 - -
Vvi8g394 856 ProSiteProfiles Zinc finger CW-type profile. 572 622 IPR011124 GO:0008270
Vvi8g394 856 MobiDBLite consensus disorder prediction 801 856 - -
Vvi8g394 856 SMART B3_2 307 408 IPR003340 GO:0003677
Vvi8g394 856 Pfam B3 DNA binding domain 307 406 IPR003340 GO:0003677
Vvi8g394 856 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 805 - -
Vvi8g394 856 MobiDBLite consensus disorder prediction 757 773 - -
Vvi8g394 856 CDD B3_DNA 305 406 IPR003340 GO:0003677
Vvi8g394 856 Gene3D - 285 411 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g767 Vvi8g394 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15163 PF02362 B3 1.10E-15 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g394 - - vvi:100251742 1706.42