Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g394 | ATGGCATCGAAAACTTGCGCGAACGTGTCGTGCCCCGGGGCGTCGTCGGGGTCGACGATCGAGTGGAGAAAAGGTTGGGCTTTGCGATCTGGTGATTTCGCCATTCTCTGCGATAAGTGCGGGTCTGCTTTTGAGCAACTAGTTTTCTGTGACATGTTTCACTCAAAGGACTCTGGTTGGAGGAAATGTACTGCATGTGGCAAGCGTCTCCATTGTGGATGCATTGCTTCCAGGTCTCTGCTTGAGCTACTTGATAGTGGTGGCGTAAATTGTATTAACTGCATAAGAAGTTCAGGACCTCACCCTATGACAGGTGATGAAAAGGCTAATGAAAGTGGTGCAATGACAGTGGATAATGTGGGTGAAATTCGTTGCACTTCTGTGGACAATCAATTAGATGGTGGTAGTGTTGAGAAGATGAAGCTTACACAGTTGGGGAATGATACATCGGGTGATGGACTGAAAAACTTTCTTCAATCTGGAAATGACAACATAAATGGGTCTCTTGGCCAAATGAAACAGGAGGAAGTTTTGCCACCTCAGGGAGAAACTGCAAACATGATGGTCAAAGATATACATGAGTCTCTGGTTCAGACAAATTTGAGTATCACCTTGGGTGCTCCTTCAGGAAATCCAAATGTGTTTCCTAGTGCAGTCGTTGAAGAAAGGGAACAACACAAAACATCCACTCCCATCCAACAGGGGCCTAGGTCTCGCCATCTTTTGCCCAAGCCCCCAAGGTCAGCACTTTCTCCTGTTTTGGAAACAAATACAGGTATAGTTCCACAAATACGTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGACTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTAGTGCTCCCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATCTCTCAACCAGAGGGCCTTCCTTTAAGGATTCAGGATGTGAAGGGGAAAGAATGGGTGTTCCAATTCAGGTTTTGGCCCAATAATAACAGCAGGATGTATGTTTTAGAGGGTGTGACCCCATGCATACAGTCAATGCAGTTACAAGCTGGAGATACTGTAACATTCAGCCGTATGGATCCAGAAGGAAAACTTGTTATGGGGTTCCGGAAAGCATCTAACTCCGTTTCCATGCAGGACACCCAACTATCTGCCATTCCTAATGGCGCTCATTCAAGTGAAACTTTCTTTTCGGGTGTTATTGAGAACCAACCTATAATAAGTGGTTACTCTGGCATTCTTCAGTCGCTGAAGGGAAGCACAGATCCCCATCTAAATGCATTGTCAAAACATTTGAATTCAGCTAGTGGGGATATTGGCTGGCATAAAACAGAGAAGCATGGAGGCAAGACAAGAGAGGGCTTGCTGCTTCCATCAATGCTGGTACCAGAGAAGAAGAGAACTCGAACAATTGGGTCTAAAAGTAAGAGATTGCTAATCGATGGCCAAGATGCTCTGGAGCTGAGGCTTACATGGGAAGAGGCACAGTCTTTGCTCCGCCCACCCCCAAGTGTCAAGCCAGTCATTGACGTGATTGAGGACTACGAATTTGAGGCATACACTGAACCCCCTGTTTTTGGAAAGAGGAGTATTTTCACAACCCTCCCATCTGGGGGAGAGGAGCAATGGGTTCAGTGTGATAGTTGCTCTAAATGGCGAAAGGTGCCCCATGATTATCTTGTTCCATGTCAGTGGACGTGTGCTGAAAATTTGTGGGATCAAAGCAGGTGTTCATGTTCTGCCCCAGATGAGTTGAGCCCTAGGGAACTCGAACATATTCTCAGACAATATAAGGATTTCAGAAAACGTCGAATTGCAGCAGTTCATAGGCCTGCACAGGAGCATGAACCTTCCGGCCTAGATGCTCTGGCCAATGCTGCAGCCCTTGGAGATGACATGAGCGACCCAGCCGCTACATCAGTTGCAACCACAACCAAACACCCGAGGCATCGCCCAGGCTGCTCATGCATTGTGTGTATCCAGCCCCCCAGTGGGAAGGGCAAGCACAAGCCCACCTGCACATGCAATGTATGTATGACAGTTAAACGTCGTTTTAAAACACTAATGATGCGGAAAAAAAAGCGCCAATCAGAGCGTGAAGCAGAGATTGCCCAGATAAATCACAATATCTGGGGCGCTAAGGATGAAGCAGAAGTGGACAGCACCTCAAGACTTGCCACTCCAAATCCTGACCCTTCGGAGATGGGATCAAACCGAGTGAGCATGATGAGTCTTCTACAAGTGGCAAGTCTTCCTTTGGAAACATATCTGAAGCAGAATGGTCTCAAAAGCTTGGCCGAGCAACAAGGCAGCTCAGGATCACATGTGCCACCACCACAAGCTACTGGAGAGAGTGAAGGACCACTAAATGAGGATCATTGTATTACTGCTCCTGCAGTTTCAGAGCGAGAGAATGGGGGAGATGAGGAGCACTCTGGACAAGATCAAAGCAAAAATGATGCTTAA | 2571 | 47.1 | MASKTCANVSCPGASSGSTIEWRKGWALRSGDFAILCDKCGSAFEQLVFCDMFHSKDSGWRKCTACGKRLHCGCIASRSLLELLDSGGVNCINCIRSSGPHPMTGDEKANESGAMTVDNVGEIRCTSVDNQLDGGSVEKMKLTQLGNDTSGDGLKNFLQSGNDNINGSLGQMKQEEVLPPQGETANMMVKDIHESLVQTNLSITLGAPSGNPNVFPSAVVEEREQHKTSTPIQQGPRSRHLLPKPPRSALSPVLETNTGIVPQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLVMGFRKASNSVSMQDTQLSAIPNGAHSSETFFSGVIENQPIISGYSGILQSLKGSTDPHLNALSKHLNSASGDIGWHKTEKHGGKTREGLLLPSMLVPEKKRTRTIGSKSKRLLIDGQDALELRLTWEEAQSLLRPPPSVKPVIDVIEDYEFEAYTEPPVFGKRSIFTTLPSGGEEQWVQCDSCSKWRKVPHDYLVPCQWTCAENLWDQSRCSCSAPDELSPRELEHILRQYKDFRKRRIAAVHRPAQEHEPSGLDALANAAALGDDMSDPAATSVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQINHNIWGAKDEAEVDSTSRLATPNPDPSEMGSNRVSMMSLLQVASLPLETYLKQNGLKSLAEQQGSSGSHVPPPQATGESEGPLNEDHCITAPAVSERENGGDEEHSGQDQSKNDA* | 857 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 10751371 | 10767781 | - | Vvi8g394 | Vvi8g394 | 790617 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g394 | 856 | MobiDBLite | consensus disorder prediction | 749 | 773 | - | - | |
Vvi8g394 | 856 | ProSiteProfiles | B3 DNA-binding domain profile. | 307 | 408 | IPR003340 | GO:0003677 | |
Vvi8g394 | 856 | Pfam | CW-type Zinc Finger | 577 | 619 | IPR011124 | GO:0008270 | |
Vvi8g394 | 856 | SUPERFAMILY | DNA-binding pseudobarrel domain | 304 | 406 | IPR015300 | - | |
Vvi8g394 | 856 | MobiDBLite | consensus disorder prediction | 226 | 252 | - | - | |
Vvi8g394 | 856 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 | 3 | 805 | - | - | |
Vvi8g394 | 856 | MobiDBLite | consensus disorder prediction | 838 | 856 | - | - | |
Vvi8g394 | 856 | Gene3D | - | 571 | 621 | - | - | |
Vvi8g394 | 856 | ProSiteProfiles | Zinc finger CW-type profile. | 572 | 622 | IPR011124 | GO:0008270 | |
Vvi8g394 | 856 | MobiDBLite | consensus disorder prediction | 801 | 856 | - | - | |
Vvi8g394 | 856 | SMART | B3_2 | 307 | 408 | IPR003340 | GO:0003677 | |
Vvi8g394 | 856 | Pfam | B3 DNA binding domain | 307 | 406 | IPR003340 | GO:0003677 | |
Vvi8g394 | 856 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 | 3 | 805 | - | - | |
Vvi8g394 | 856 | MobiDBLite | consensus disorder prediction | 757 | 773 | - | - | |
Vvi8g394 | 856 | CDD | B3_DNA | 305 | 406 | IPR003340 | GO:0003677 | |
Vvi8g394 | 856 | Gene3D | - | 285 | 411 | IPR015300 | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15163 | PF02362 | B3 | 1.10E-15 | CL0405 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g394 | - | - | vvi:100251742 | 1706.42 |