Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g397 ATGGTGGTGACACTTTTTGCTGTTCTGTTTATAGTTCCTGTTGTTTTGGGATCTCTGGACCCGGGCTTCAACGACGACGTTTTGGGGTTGATTGTGTTCAAGGCTGGCCTCCAAGATCCGGAGTCGAAGCTCATATCTTGGAATGAAGACGATAACAACCCCTGCAACTGGGCCGGTGTGAAATGCGATCGCCAGACCAACCGTGTTTCGGAGCTCCTCCTTGACAACTTCTCTCTTTCGGGTCGGATTGGTAGAGGCCTTTTGCGGCTGCAATTCCTTCGGATATTGTCGGGAGTGAACTTCTCCTCTAATCAGCTTTCTGGGCAATTGCCCGATGGAATCTGGTCTTTGTATGGGCTAAGATCGCTTGATTTATCCAATAATTTTCTGGAGGGTGAGATCCCAGAAGGAATTGGAAGTTTGTATAGTCTAAGAGCAATTAATTTGGGGAAGAACAAGTTCTCAGGCCGCATCCCAGACAGCATTGGAAGTTGTTTGCTTTTGAGATTGCTTGATTTGAGTGAAAATTTATTTTCCGGGGGGCTTCCAGAGTCGATGCAGAGACTTAGAATGTGCAATTATCTTAGTTTACGGGGTAATTTGTTGACGGGAGAAATTCCAAATTCAATTGGAAACCTTTTATTGTTGAAGGAACTAAATTTATCCTCTAATCAGTTCGGTGGAAGTTTGCCAGAGTCTATGACAAAATGCACTAACCTTGTGGCTATGGATGTTAGCCACAACTTGTTGACAGGTAATCTTCCCGCCTGGATTTTTAGTTTGGGTTTACAAACTATTTCACTTGCGGGGAACAAACTCAATGGAAGTGTAGAATATTCTCCTCTAACTAGTTTGCAGTTCTTGAATATGTCGAGAAACTCTCTGATTGGTTCTATTCCAGAAAGCATAGGTGAATTAAAAACTTTACATGTCCTTGATTTGAGCAACAATCAGCTAAATGGAAGCATTCCTTTTGAAATCAGAGGTGCAGTTTTGCTGAAGGAACTAAAGCTGGAGAAGAACTTTCTTACTGGGAAAATTCCAACCCAGATTGAGAAGTGCAAGTCACTGACCTCTTTGATCTTATCTCAGAACCACCTCACAGGTCCAATCCCTGCAGCCATTGCTAACCTCACCAGCATTGAAAATGTGGACTTGTCATTTAACAATCTCTCAGGAAGTTTACCAAAGGAGCTAACAAATCTCTCCCACCTCCTATCCTTCAATATCTCTCATAACAACATCCAAGGTGAATTGCCATCCGGTGGCTTCTTCAACACCATCTCCCCATCATCTGTCTCTGGTAATCCATCCCTTTGTGGCTCTGTTGTGAACCGCTCCTGCCCTTCTGTCCATCCCAAACCCATTGTCCTTAATCCTGATTCTTCTTCCAACTCCTCTAATGCCGGCTCTTTCCCTTCAAATCGCCGTCACAAGATTATACTCAGCATCTCTGCTCTCATTGCCATTGGTGCAGCCATTTTCATTGCAGTTGGTGTTTTAGCGATCACTATCCTCAACATCCATGCCCGGTCATCTATGTCTCATGCTGCTGCCAGCCCAATATTATCTGGTGGGGATGATTTTAGTCATTCCCCCACTAATGATGCTCAGTATGGCAAGCTTGTCATGTTCTCTGGTGATGCTGACTTTGTTGCTGGGGCACATGCATTACTCAACAAGGATTGTGAACTCGGTCGTGGTGGGTTTGGAGCTGTTTATCGAACAATCCTTCGAGATGGGCGTTCAGTTGCTATCAAGAAGTTGACTGTTTCAAGTTTGATCAAGTCCCAAGAAGATTTTGAGAGGGAAGTGAAAAACCTTGGAAAGATCAGGCACCATAATCTAGTGGCACTCGAAGGGTATTACTGGACTTCATCCTTACAGCTGCTCATTTATGAATACATCTCCAGTGGGAGTTTGTATAAACATCTCCATGAGGTTCCAGGCAAAAGCTGCCTCTCTTGGCGAGAGAGTGGTGGTGAACCCAAGGTGGGAGACTTTGCCTTGGCAAGGCTGTTACCAATGTTAGACCGCTATGTTCTAAGCAGCAAGATTCAGAGTGCACTTGGATACATGGCACCTGAATTTGCATGTCGAACAGTGAAAATAACCGAGAAATGCGATGTGTATGGGTTTGGTGTCTTGGTTCTGGAGGTAGTGACCGGGCGGAGACCTGTGGAATACATGGAGGATGATGTGGTTGTCCTTTGTGACATGGTGAGGGGAGCACTTGATGAAGGTAAGGTGGAAGAATGTGTTGACAGGAGGCTCCAGGGGGAATTTCCAGCAGATGAGGCTATTCCAGTGATAAAACTTGGGCTGATATGTGCATCTCAGGTGCCATCAAATCGGCCAGACATGGGAGAAGTGGTGAACATTTTAGAACTGATCCAATGCCCGTCAGAAGGCCAAGCATTAGAATGA 2427 44.99 MVVTLFAVLFIVPVVLGSLDPGFNDDVLGLIVFKAGLQDPESKLISWNEDDNNPCNWAGVKCDRQTNRVSELLLDNFSLSGRIGRGLLRLQFLRILSGVNFSSNQLSGQLPDGIWSLYGLRSLDLSNNFLEGEIPEGIGSLYSLRAINLGKNKFSGRIPDSIGSCLLLRLLDLSENLFSGGLPESMQRLRMCNYLSLRGNLLTGEIPNSIGNLLLLKELNLSSNQFGGSLPESMTKCTNLVAMDVSHNLLTGNLPAWIFSLGLQTISLAGNKLNGSVEYSPLTSLQFLNMSRNSLIGSIPESIGELKTLHVLDLSNNQLNGSIPFEIRGAVLLKELKLEKNFLTGKIPTQIEKCKSLTSLILSQNHLTGPIPAAIANLTSIENVDLSFNNLSGSLPKELTNLSHLLSFNISHNNIQGELPSGGFFNTISPSSVSGNPSLCGSVVNRSCPSVHPKPIVLNPDSSSNSSNAGSFPSNRRHKIILSISALIAIGAAIFIAVGVLAITILNIHARSSMSHAAASPILSGGDDFSHSPTNDAQYGKLVMFSGDADFVAGAHALLNKDCELGRGGFGAVYRTILRDGRSVAIKKLTVSSLIKSQEDFEREVKNLGKIRHHNLVALEGYYWTSSLQLLIYEYISSGSLYKHLHEVPGKSCLSWRESGGEPKVGDFALARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGRRPVEYMEDDVVVLCDMVRGALDEGKVEECVDRRLQGEFPADEAIPVIKLGLICASQVPSNRPDMGEVVNILELIQCPSEGQALE* 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10799441 10803380 - Vvi8g397 Vvi8g397 790620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g397 808 Pfam Leucine rich repeat 333 391 IPR001611 GO:0005515
Vvi8g397 808 SUPERFAMILY Protein kinase-like (PK-like) 563 794 IPR011009 -
Vvi8g397 808 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 659 799 - -
Vvi8g397 808 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 96 658 - -
Vvi8g397 808 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 6 97 - -
Vvi8g397 808 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 659 799 - -
Vvi8g397 808 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 96 658 - -
Vvi8g397 808 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 97 - -
Vvi8g397 808 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Vvi8g397 808 Gene3D Phosphorylase Kinase; domain 1 536 635 - -
Vvi8g397 808 ProSiteProfiles Protein kinase domain profile. 559 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g397 808 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515
Vvi8g397 808 Pfam Leucine Rich Repeat 284 306 IPR001611 GO:0005515
Vvi8g397 808 ProSitePatterns Protein kinases ATP-binding region signature. 565 588 IPR017441 GO:0005524
Vvi8g397 808 Gene3D Ribonuclease Inhibitor 191 262 IPR032675 -
Vvi8g397 808 Pfam Protein tyrosine and serine/threonine kinase 664 794 IPR001245 GO:0004672|GO:0006468
Vvi8g397 808 Pfam Protein tyrosine and serine/threonine kinase 561 648 IPR001245 GO:0004672|GO:0006468
Vvi8g397 808 Gene3D Ribonuclease Inhibitor 24 190 IPR032675 -
Vvi8g397 808 SMART LRR_typ_2 282 306 IPR003591 -
Vvi8g397 808 SMART LRR_typ_2 378 401 IPR003591 -
Vvi8g397 808 SMART LRR_typ_2 213 237 IPR003591 -
Vvi8g397 808 SMART LRR_typ_2 117 141 IPR003591 -
Vvi8g397 808 SMART LRR_typ_2 402 426 IPR003591 -
Vvi8g397 808 PRINTS Leucine-rich repeat signature 120 133 - -
Vvi8g397 808 PRINTS Leucine-rich repeat signature 306 319 - -
Vvi8g397 808 SUPERFAMILY L domain-like 43 436 - -
Vvi8g397 808 Gene3D Ribonuclease Inhibitor 263 454 IPR032675 -
Vvi8g397 808 Gene3D Transferase(Phosphotransferase) domain 1 638 801 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g397 Vvi13g174 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76809 PF07714 PK_Tyr_Ser-Thr 3.90E-11 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g397 - - vvi:100248331 1310.43