Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g4 ATGGCTGCTGCTTGTGCTCTTCTCGGTGACAATGGTAGAGAAATGGATGCCAATGGCAGCGCCGGCGCGAGCTTAACTCCTTTGACCAGTACCTCCATAAGCAGCGGCTGCGACCAACTAAATCATCATTTTCAGCGTGCAAAGATGGTGAGGAAGAGGACTGCTTCCGAAGTGGAGCTCCAAACTGGCTCTTATCACAGGTTTTCACGCCGACCTATCACCGCAATGAATCCTAATCCTCTCCACGACATGGGTGGGGGTGGCTCTTCTTTGTCTTTCCCATCTAATAATATTTCTTCAAGGGATGACAACAGCAACAGCAACAGTGCTACCCCAAATTCTACCCACGTCCCCAACCACTCCACTATCTCACCTTGTTCCACGAATTCCACTGTGACGTCTTCAACAAACTTGGCTTACATTGACACCTTGGCTCCTCTACCTCAGCCACCCGCCGTGTGTGGCTTCTCCGGCCTGCCCTTGTTTCCACCCGAAAGAAATAGAAACACCAGCGGCACCCTTGCTTCAGCTGCGTTTCTTCCGGCTCCTGCTGTACCCCCTCTCACGCCTCCTTCCATGGAAGACACTACAGCAACGGCCTGGATCGACGGCATCTTGAAGGACCTCATCCACAGCTCCACCAACGTTCCCATACCCCAGCTCATCCAAAATGTGAGGGAGATCATACACCCTTGTAACCCTAACCTGGCCTCCATCCTCGAGTACAGACTTCGTTCTTTGACTGACCCAAACCCCATCCCTAATTACCCGGAAAGGAGGAGGAAGGATGGGCCTCCGGTGGCCCAGCACCTCAGTGACCACCAGGCCAGCCCTTCCTCTGTAGCTCCAGTTCTAGACGAGGAAGGGTTACACCTCCTGACCCTACTCCTGCAATGCGCCGAGGCCGTTTCAGCTGACAACTTTGAAGAGGCTAACAAGATGCTGCTTGAGATTTCTGAGCTCTCCACTCCCTTTGGAACTTCGGCGCAGCGGGTTGCGGCTTACTTCTCAGAAGCAATGTCAGCAAGGCTGGTAAGTTCGTGCTTAGGTATATATGCGACGCTGCCCACAGTGCCGCACAGCCAGAAATTGGTATCGGCCTTCCAGGTGTTCAACGGCATTAGCCCCTTCGTGAAGTTCTCGCATTTTACGGCGAACCAGGCCATACAGGAGGCGTTTGAGAGGGAGGAGAGAGTGCACATTATAGATCTGGACATCATGCAAGGCTTGCAGTGGCCGGGGCTTTTTCACATCCTAGCATCCAGACCCGGTGGCCCGCCCTTTGTTCGCCTCACTGGACTTGGGACCTCCATGGAGGCCCTGGAAGCCACAGGCAAGCGTTTGACTGATTTTGCTGAGAAATTGGGCCTTCCCTTCGAGTTCTTCCCTGTTGCCGAGAAAGTTGGGAACTTGGATCCCGAGAGGCTCAATGTGAGCAAGAGGGAGGCTGTTGCCGTCCATTGGTTGCAGCATTCCCTCTACGACGTCACAGGTTCCGACACCAATACGCTGTGGCTCTTGCAGAGATTAGCACCAAAAGTGGTGACTGTTGTAGAGCAAGACCTGAGCCACGCCGGCTCCTTCTTGGGAAGGTTCGTGGAGGCCATACATTACTACTCGGCGCTGTTTGACTCGCTTGGGGCGAGCTACGGAGAGGAGAGCGAGCAGAGGCACGCTGTGGAGCAACAGCTTCTATCCAGGGAGATCCGAAACGTGCTTGCTGTTGGTGGGCCTTCGAGGAGTGGAGACGTCAAGTTCAATAACTGGAGGGAGAAGCTTCAGCAATCGGGTTTCAGAGTGGTTTCACTGGCTGGGAATGCAGCCACTCAAGCCACTCTTCTCCTGGGAATGTTCCCGTCTGATGGTTACACATTGGTGGAGGACAATGGCACCCTCAAGCTTGGTTGGAAAGACCTCTGTTTACTTACTGCTTCTGCCTGGAGACCATTTCATGCTGCTGCTACCACCACACCCACCCACCACTACGCTCATTGA 1995 53.93 MAAACALLGDNGREMDANGSAGASLTPLTSTSISSGCDQLNHHFQRAKMVRKRTASEVELQTGSYHRFSRRPITAMNPNPLHDMGGGGSSLSFPSNNISSRDDNSNSNSATPNSTHVPNHSTISPCSTNSTVTSSTNLAYIDTLAPLPQPPAVCGFSGLPLFPPERNRNTSGTLASAAFLPAPAVPPLTPPSMEDTTATAWIDGILKDLIHSSTNVPIPQLIQNVREIIHPCNPNLASILEYRLRSLTDPNPIPNYPERRRKDGPPVAQHLSDHQASPSSVAPVLDEEGLHLLTLLLQCAEAVSADNFEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYATLPTVPHSQKLVSAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGTSMEALEATGKRLTDFAEKLGLPFEFFPVAEKVGNLDPERLNVSKREAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEQRHAVEQQLLSREIRNVLAVGGPSRSGDVKFNNWREKLQQSGFRVVSLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWRPFHAAATTTPTHHYAH* 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 115792 118526 - Vvi8g4 Vvi8g4 790227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g4 664 Pfam GRAS domain family 293 648 IPR005202 -
Vvi8g4 664 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 281 650 IPR005202 -
Vvi8g4 664 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 256 IPR005202 -
Vvi8g4 664 MobiDBLite consensus disorder prediction 250 280 - -
Vvi8g4 664 MobiDBLite consensus disorder prediction 70 129 - -
Vvi8g4 664 MobiDBLite consensus disorder prediction 89 129 - -
Vvi8g4 664 ProSiteProfiles GRAS family profile. 283 648 IPR005202 -
Vvi8g4 664 PANTHER PROTEIN SCARECROW 126 256 - -
Vvi8g4 664 PANTHER PROTEIN SCARECROW 281 650 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g905 Vvi8g4 ECH
Vvi6g948 Vvi8g4 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15164 PF03514 GRAS 1.10E-125 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g4 - - egr:104425152 770.385