Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g40 ATGTTGAATTCTTGTTTGTGCTTGACTGCAGTCACTGCATTGAGAGCAATCCGTCGTAAGCTCAGTGATCCTAAGAAGAGACTCAACAATTGGAAAAGCAAGGACCCATGTGCATCAAATTGGACTGGGGTAATCTGCAGCATGAATCCAGATGATGGTTATCTCCATGTCCAAGAACTGAGGTTGCTAAATTTTAGTCTCAATGGGAAATTAGCGCCAGAGCTTGGCCTACTATCTTATATGACCATATTGGATTTTATGTGGAACAATATAAGTGGCAGCATACCGAGGGAGATAGGTGATATTACCTCTTTGAAGCTCCTGCTTTTAAATGGAAATCAAATATCAGGTTCTTTACCAGAAGAGCTCGGTAATCTGACTAACCTGAACAGATTTCAAGTGGATCTGAACAATATATCAGGACCACTGCCAAAATCATTTCGAAACTTGACCAGTTGTCTACATTTTCATATGAACAATAATTCAATCAGTGGTCAAATTCCAGCTGAGCTATCTTCATTGCCTCAACTTATACACTTCCTGCTTGACAACAACAATTTGTCAGGGTATCTTCCACCAGAGCTTTCTCAAATGCCGAAACTGAAGATTCTTCAACTTGACAACAACAACTTTGGTGGGACTGAGATTCCAGAATCATATGGCAACATGTCCAAACTGTTGAAACTGAGTCTTAGGAACTGCAACTTGCAAGGAAGTATTCCCAATCTAAGCAGGATACCAAACCTTCATTACTTAGATCTTAGCCATAATCAACTTACGGGAAGTATACCATCAAATAGGCTTTCCAATAACATCACAACCATTGACCTGTCCAGTAATATGCTTAGCGGATCTATCCCCTCAAGCTTTTCGGGCCTTCCTCATCTTGAGAGATTGTCACTCGAGAACAATTTGTTGAATGGTTCCATTAGCTCTGCCATTTGGGAGAATGTGACTTTTGCTGCTAATGCAACACTTACCTTGGATTTCCAGAACAATTCATTTTCAAACATTTCTGGCAGTTTTGTTCCTCCTTCAAATGTCACAATCAAGCTAAATGGTAATCCTCTCTGTACAAATGCAAATGCACTAAACATCGTCCAATTCTGTGGAACTGCAAATGGAGAGGATGAGGCTCCTGGAAGCCCAGACAACTCCAACATTACCTGCCCGTCTCAATCCTGTCCTCTCAATGATCATTTCGAATATGTCCCCGGATCTCCTGTTTCTTGCTATTGTGCCGCACCACTCGGAGTTGGATTTCGCTTGAGAAGTCCTAGCATATCAGATTTTCCTCCATACACTGATCAATTTAAGGCATATATAACCTCCAATCTTGGTTTGGTTCCTTACCAACTACACATTGATTCATTCATATGGCAAAAGGGTCCGAGGCTAAGGATGTATTTGAAGTTCTTTCCCCAGTATAATAATCAATCTAATACATTTAACACAAGTGAAATACAGCGGATTAGAGACTTAATCACCACATTTACAATTCCTGGGGATGATATCTTTGGCCCATATGATCTGCTTAATTTCACTCTTGTGGGACCTTATTCAGACGTTGATCTCGAGTCCAAAAAATCAGGTATAAGCAAAGGTGTTATTGTTGGAATTGTTTTGGGTGGCCTCTCCTTCGCAACTGCCATAGTTTTGGTCATTGCAGTTGTGTTCTGGAAAAAGCAGACTCGACATGGGCATAAAGATTCAAAACAACAACCATTTTCAAAGACTGCAGTGATAATAGAAGGTGTGAAAGGATTTAGTTTTGGAGAAATGGAAATTGCTACTGAAAATTTTAGTGAAGCTACTCAAATTGGCCAAGGAGGCTATGGGAAGGTATATAAAGGCATTTTAGCAGATGGAACAGTTGTAGCAATAAAGCGTGCACAACAAGGATCTTTGCAGGGTGAGAAAGAGTTCTTTACTGAGATTGGATTGTTGTCACGATTACATCATCGTAATCTGGTTTCATTGATTGGGTATTGCGATGAAGAACAGGAACAGATGCTTGTATATGAATTCATGCCGCATGGTTCACTGCACAGTCTCCTTTCTGGTAAAGTCCAGAGGAACTCTTACTTTTGTGACAAGATTGCATATTGCATTATGTTCAGCCAAGGGTTATCAGATGGTGAAGAAGGTGCCACTGCTCATGTATCCACTGTTGTGAAAGGCACACCAGGCTACCTTGATCCAGAGTATTTCTTTACTCACAAGTTAACAGAAAAGAGCGATGTTTATAGCCTGGGAATTGTATTTCTAGAATTGTTGACCGGGATGCAGCCTATATCTCAAGGTAGAAACATTGTCCGAGAGGTAACTGCAGCATGTCAATCTGGAGCAATGTTCTCAATCATAGACCAGAACATGGGTCCATTTCCTTCTGACTGTGTCAAGGAGTTCATGACACTGGCCCTCAGATGCAGTCAGGATTTGACGAAGGATCGGCCTTCAATGCTGGAGGTGGTCAGAGAGTTGGAGAACATATCCTCAATGCTACCGCAAGCTGGACATGGTCGATCAAAGTCAGACACCTCTGCTTCTGGAATATCAGTAATGGGCACCACAGCAGTCTATCCTGGAAGAAACTCCTATGTTTCTGGTTTCCCCGGGAGCGATCTCGTCAGTGGGAGATTTCCTTCTTTATTTTATTTTTTGGGAGGGGGGTTTTTTTGTTTCTTTGCGGAAACTACTAGTCCTTCTGAAGTCACTGCACTGCGAGCTGTCAAGAAAAGGTTAATTGATCCTATGAAGAATATTAGAAATTGGGGAAAGGGAGATCCATGTACGTCCAAGTGGAAAGGCATTATTTGTAAAGATAAAAACACAACAGATGGATACTTGCATGTTAATGCGCTCCTGCTGCTGAAAATGAATCTATCTGGAACTTTAGCACCTGAACTTGGCCAACTATCTCATCTTGAAATTATAGATTTCTTGTGGAATGACTTAAGTGGCAGTATACCAAAGGAGATAGGAAACATTGCACCTCTGAGACTCTTGCTCTTGAGTGGAAACAGATTGTCGGGCTCTTTACCTGATGAGCTTGGTTATCTTTTACATTTAGATAGACTCCAAATAGATGAGAATCACATATCAGGACCAGTTCCAAAATCATTTGCAAACTTGAGCAGAATTAAACATCTCCACATGAACAATAACTCACTCAGTGGTCGAATTCCTTCTGAGCTTTCCAATGCATCAACTCTTCGTCACTTGCTTTTCGACAATAATAACTTGTCTGGGAATCTTCCACCAGAATTGTCACACCTCCCAGAACTGCGCATACTTCAACTTGATAACAACAACTTCAGTGGAGCTGAAATTCCAATTTCTTATGGGAACCTGTCCAATTTGGTAAAATTAAGTCTTAGAAATTGCAGCTTGCAGGGAGCTGTCCCTGATTTCAGCAAGATAGCGAACCTAAGCTATTTAGATCTTAGCTTGAACCAGCTTACTGGACCCATTCCATCAAATAAACTTTCAGACAATATGACAACTATTGATCTTTCAGGCAACCATCTCAATGGGTCTATCCAGGAAAGTTTCTCAGATCTTCCTCGGCTACAGAAACTGTTACTTGAGAATAATTTATTGAGTGGTTCTGTGCCCACTGGCATTTGGCAGAACAGATCCTTAAGTACATCAGCTAAACTTACAGTTGATCTCCAGAACAATTCATTCTCGAACATCACAGGTGATCTAAATCCCCCAGCAAATGTCACCCTATGGCTCCAGGGCAATCCTATATGCAGTAATGCAAACATAGTAAACATTCACCTATTCTGTGGATCTGAATCTGGAGGGGAAGAGAATCCTGAAAGTTCAACAAATTCAACAGATAATTGTCGTATTCAAGAATGTCTCACAGACGATTTCTTTGAATATGTTCCAGCATCCCCTATCCCGTGCTTTTGTGCTTCACCTCTTCGAGTAGGATATCGGCTGAAAAGTCCTAGCTTCTCTTATTTCATTCCATATGAATCTCCATTTGAAAAGTATGTAACCAGTGTCCTCAACATGGAGCTGTATCAATTACACATTGATTCATTTTTCTGGGAAGAAGGGCCTCGTCTGAGGATGCATTTTAAGCTTTTTCCAACATACAATAATCACACATTCAATACAAGTGAGGTTCTGCGAATTAGAGGCATCTTTGCATCATGGGACTTTCCTAGCAATGACTTTTTTGGACCATATGAGCTTCTCAGCTTCCCTCTCCTGGGACCTTATTCAGGCATTGATTCTGCGACTCATGGAAAAAGTCTTAGCATGGGTATATGGGTTGCAATTTTATTAGGAGCCATTGCCTGCGCCATTGCAATTTCGATAACTGTTACACTTCTTATTGTAAGAAGACATTCTAAATACCAGAATACTGTGTCAAGAAGGCGCTTGTCCTCAACAATTTCTATGAAAATTGATGGTGTGAGAGACTTCACTTATAGAGAAATGGCTCTAGCTACTGACAATTTCAATGACTCAACTCAAGTTGGTCAAGGAGGTTATGGAAGAGTTTATAAGGGAATTTTATACGACAACACAGTTGTGGCAATAAAACGAGCACAGGAAGGATCCTTACAGGGTCAAAAGGAATTCTTGACTGAGATTCAGTTGTTGTCAAGGTTGCATCACAGGAACCTAGTTTCCTTGATTGGATACTGTGCCGAAGAAGGGGAACAGATGTTGGTTTACGAGTTCATGCCCAATGGAACCTTGCGGGACTGGCTTTCTGCTAAATCTAAAACCCTGATATTCAGTACGAGGTTACGCATTGCACTTGGTTCAGCCAAGGGCATTCTTTACCTCCATACTGAAGCGCAGCCTCCCATATTCCACCGAGATATCAAAGCCAGCAACATACTTCTGGATTCTAAGTTTACACCTAAAGTTGCTGATTTTGGACTCTCACGGCTTGCACCAGACCTAGAAGATGAAGGGGCTGTGCCTAATCATGTATCCACCATTGTGAAGGGAACACCGGGTTACCTCGACCCAGAATACTTCTTGACCCGTAAGTTGACAGATAAAAGTGATGTGTATAGCCTTGGAGTTGTATTTCTGGAGATCTTAACGGGTATGCAGCCAATATCGCATGGCAAAAACATTGTCCGTGAGGTGAATATGTCTCATCAGCTGGGCATGGTGTTCTCCATCATAGACAACAAAATGGGTTCCTACCCTTCTGAATGTGTCGAGAGGTTCTTAGCTTTAGCTCTTAGGTGTTGCCATGACAAGCCAGAGGATCGGCCATCTATGTTAGACGTGGTAAGGGAGCTGGAAAACATACTGCGAATGATGCCTGAAATCGAAACCCAGTCCTCAGAATCTGCATCACATTCTGGGAAGTTGCTGTCGCTGCCCTCTTCATCCTATGTGAGCAGGGACTTATATTCAATATCAAATGCGTCAGGAAGTGATCTTGTCAGCGGTGTCATTCCCACCATTGCACCTCGATAA 5466 41.66 MLNSCLCLTAVTALRAIRRKLSDPKKRLNNWKSKDPCASNWTGVICSMNPDDGYLHVQELRLLNFSLNGKLAPELGLLSYMTILDFMWNNISGSIPREIGDITSLKLLLLNGNQISGSLPEELGNLTNLNRFQVDLNNISGPLPKSFRNLTSCLHFHMNNNSISGQIPAELSSLPQLIHFLLDNNNLSGYLPPELSQMPKLKILQLDNNNFGGTEIPESYGNMSKLLKLSLRNCNLQGSIPNLSRIPNLHYLDLSHNQLTGSIPSNRLSNNITTIDLSSNMLSGSIPSSFSGLPHLERLSLENNLLNGSISSAIWENVTFAANATLTLDFQNNSFSNISGSFVPPSNVTIKLNGNPLCTNANALNIVQFCGTANGEDEAPGSPDNSNITCPSQSCPLNDHFEYVPGSPVSCYCAAPLGVGFRLRSPSISDFPPYTDQFKAYITSNLGLVPYQLHIDSFIWQKGPRLRMYLKFFPQYNNQSNTFNTSEIQRIRDLITTFTIPGDDIFGPYDLLNFTLVGPYSDVDLESKKSGISKGVIVGIVLGGLSFATAIVLVIAVVFWKKQTRHGHKDSKQQPFSKTAVIIEGVKGFSFGEMEIATENFSEATQIGQGGYGKVYKGILADGTVVAIKRAQQGSLQGEKEFFTEIGLLSRLHHRNLVSLIGYCDEEQEQMLVYEFMPHGSLHSLLSGKVQRNSYFCDKIAYCIMFSQGLSDGEEGATAHVSTVVKGTPGYLDPEYFFTHKLTEKSDVYSLGIVFLELLTGMQPISQGRNIVREVTAACQSGAMFSIIDQNMGPFPSDCVKEFMTLALRCSQDLTKDRPSMLEVVRELENISSMLPQAGHGRSKSDTSASGISVMGTTAVYPGRNSYVSGFPGSDLVSGRFPSLFYFLGGGFFCFFAETTSPSEVTALRAVKKRLIDPMKNIRNWGKGDPCTSKWKGIICKDKNTTDGYLHVNALLLLKMNLSGTLAPELGQLSHLEIIDFLWNDLSGSIPKEIGNIAPLRLLLLSGNRLSGSLPDELGYLLHLDRLQIDENHISGPVPKSFANLSRIKHLHMNNNSLSGRIPSELSNASTLRHLLFDNNNLSGNLPPELSHLPELRILQLDNNNFSGAEIPISYGNLSNLVKLSLRNCSLQGAVPDFSKIANLSYLDLSLNQLTGPIPSNKLSDNMTTIDLSGNHLNGSIQESFSDLPRLQKLLLENNLLSGSVPTGIWQNRSLSTSAKLTVDLQNNSFSNITGDLNPPANVTLWLQGNPICSNANIVNIHLFCGSESGGEENPESSTNSTDNCRIQECLTDDFFEYVPASPIPCFCASPLRVGYRLKSPSFSYFIPYESPFEKYVTSVLNMELYQLHIDSFFWEEGPRLRMHFKLFPTYNNHTFNTSEVLRIRGIFASWDFPSNDFFGPYELLSFPLLGPYSGIDSATHGKSLSMGIWVAILLGAIACAIAISITVTLLIVRRHSKYQNTVSRRRLSSTISMKIDGVRDFTYREMALATDNFNDSTQVGQGGYGRVYKGILYDNTVVAIKRAQEGSLQGQKEFLTEIQLLSRLHHRNLVSLIGYCAEEGEQMLVYEFMPNGTLRDWLSAKSKTLIFSTRLRIALGSAKGILYLHTEAQPPIFHRDIKASNILLDSKFTPKVADFGLSRLAPDLEDEGAVPNHVSTIVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLEILTGMQPISHGKNIVREVNMSHQLGMVFSIIDNKMGSYPSECVERFLALALRCCHDKPEDRPSMLDVVRELENILRMMPEIETQSSESASHSGKLLSLPSSSYVSRDLYSISNASGSDLVSGVIPTIAPR* 1822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 801436 862302 - Vvi8g40 Vvi8g40 790263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g40 1821 Gene3D Ribonuclease Inhibitor 1165 1261 IPR032675 -
Vvi8g40 1821 Gene3D Transferase(Phosphotransferase) domain 1 1570 1784 - -
Vvi8g40 1821 Gene3D Transferase(Phosphotransferase) domain 1 703 847 - -
Vvi8g40 1821 Gene3D Ribonuclease Inhibitor 900 1164 IPR032675 -
Vvi8g40 1821 Gene3D Ribonuclease Inhibitor 270 413 IPR032675 -
Vvi8g40 1821 ProSiteProfiles Leucine-rich repeat profile. 248 270 IPR001611 GO:0005515
Vvi8g40 1821 SUPERFAMILY Protein kinase-like (PK-like) 587 836 IPR011009 -
Vvi8g40 1821 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 710 858 - -
Vvi8g40 1821 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 892 1796 - -
Vvi8g40 1821 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 710 - -
Vvi8g40 1821 Gene3D Phosphorylase Kinase; domain 1 1465 1569 - -
Vvi8g40 1821 SUPERFAMILY L domain-like 20 360 - -
Vvi8g40 1821 ProSitePatterns Protein kinases ATP-binding region signature. 1500 1522 IPR017441 GO:0005524
Vvi8g40 1821 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 892 1796 - -
Vvi8g40 1821 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 10 710 - -
Vvi8g40 1821 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 710 858 - -
Vvi8g40 1821 SMART LRR_typ_2 293 317 IPR003591 -
Vvi8g40 1821 SMART LRR_typ_2 174 198 IPR003591 -
Vvi8g40 1821 SMART LRR_typ_2 102 126 IPR003591 -
Vvi8g40 1821 SMART LRR_typ_2 246 270 IPR003591 -
Vvi8g40 1821 SMART LRR_typ_2 1188 1212 IPR003591 -
Vvi8g40 1821 SMART LRR_typ_2 1118 1140 IPR003591 -
Vvi8g40 1821 SMART LRR_typ_2 1093 1116 IPR003591 -
Vvi8g40 1821 SMART LRR_typ_2 1045 1069 IPR003591 -
Vvi8g40 1821 SUPERFAMILY L domain-like 917 1257 - -
Vvi8g40 1821 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Vvi8g40 1821 Pfam Protein kinase domain 722 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g40 1821 Pfam Protein tyrosine and serine/threonine kinase 1498 1762 IPR001245 GO:0004672|GO:0006468
Vvi8g40 1821 Pfam Protein tyrosine and serine/threonine kinase 605 710 IPR001245 GO:0004672|GO:0006468
Vvi8g40 1821 Gene3D Phosphorylase Kinase; domain 1 561 676 - -
Vvi8g40 1821 ProSiteProfiles Protein kinase domain profile. 601 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g40 1821 ProSiteProfiles Protein kinase domain profile. 1494 1766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g40 1821 SMART serkin_6 1494 1769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g40 1821 SMART serkin_6 601 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g40 1821 SUPERFAMILY Protein kinase-like (PK-like) 1480 1792 IPR011009 -
Vvi8g40 1821 CDD STKc_IRAK 1500 1765 - -
Vvi8g40 1821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1613 1625 IPR008271 GO:0004672|GO:0006468
Vvi8g40 1821 Pfam Leucine rich repeat N-terminal domain 11 47 IPR013210 -
Vvi8g40 1821 Pfam Leucine rich repeat N-terminal domain 902 940 IPR013210 -
Vvi8g40 1821 Gene3D Ribonuclease Inhibitor 9 269 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g781 Vvi8g40 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76810 PF07714 PK_Tyr_Ser-Thr 8.10E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g40 - - vvi:100243382 1793.86