Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g407 ATGGTTTTCTCTGATGTACCTGGTTTGACCAAAACCAGAATGTGCAAACCAATCCAGAACCAGCTACTTTTTCCTATGAACCCCACTGATATTGTCCCCTTGGATCATGTTGAGTTAGATTTTGCTGATGTGTTTGGTCCTCTACCAGTCCAGACACCCACAGATACAAATGATCTCATTTATGGTGATCCAGTTGTTATTTATAGCCGGTCACATTCTTTGGTTGGCCCCTCAACTTGTCTTAGTCAATCATTGAAGCTCAGCAAGCTCGCTTTACATGAGATAGAGGATTCAGAGGAACTTGTGGAGTGTCTTCATGAAGAGGCTACTGTGGGCCTTGAGGATTTTGAAGTTATGAAGCTTGTTGGGCAGGGTGCATTTGGAAAAGTATTCCAGGTGAGGAAGAGAAATACATCAGAAATATATGCAATGAAGGTCATGCGGAAAGATAAGATTATGGAGAAAGATCATGCTGAATATATGAAAGCTGAAAGGGATATTTTAACAAAAGTAGATCACCCCTTCATCGTCCAGCTCCGATACTCGTTTCAGACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAGAGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCATCTTCACGCAAATGGAATAATGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCATGCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGATCAAATTCAATGTGTGGAACTGTAGAATATATGTCACCTGAAATTTTTCTTGGGAAAGGTCATGATAAGGCTGCAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAGCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAAGATAAGATCAAGCTTCCAGCCTTTTTGTCAAGTGATGCGCATTCTGTGTTGAAAGGGCTGCTACAAAAGGACCCAAGCAAGCGCCTGGGAAGTGGACCGTTGGGGATCGATGAAATCAAGCACCATAAGTGGTTCAAACCAATCAACTGGAGGAAGCTGGAGGCTCGTGAGATTCAGCCAAGTTTTCGTCCAGAAGTTGATGGAAAACTCTGCATTGCAAACTTTGAGAAGCGATGGACCGACATGCCATTGGCTGATTCTCCTGCTGCCAGCCCAAAAGCCAACGGAAATATCTTCACAGGCTTCACCTATGTAAGGCCTGCGGCCTCTTTTCTTCGAAGGAATAGCCCCTTGAATTAA 1341 43.18 MVFSDVPGLTKTRMCKPIQNQLLFPMNPTDIVPLDHVELDFADVFGPLPVQTPTDTNDLIYGDPVVIYSRSHSLVGPSTCLSQSLKLSKLALHEIEDSEELVECLHEEATVGLEDFEVMKLVGQGAFGKVFQVRKRNTSEIYAMKVMRKDKIMEKDHAEYMKAERDILTKVDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYNHGLFREDLARIYAAEIVSAVSHLHANGIMHRDLKPENILLDADGHAMLTDFGLAKEFDENTRSNSMCGTVEYMSPEIFLGKGHDKAADWWSVGILLFEMLTGKPPFIGGNRQKIQQKIIKDKIKLPAFLSSDAHSVLKGLLQKDPSKRLGSGPLGIDEIKHHKWFKPINWRKLEAREIQPSFRPEVDGKLCIANFEKRWTDMPLADSPAASPKANGNIFTGFTYVRPAASFLRRNSPLN* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10896653 10902936 + Vvi8g407 Vvi8g407 790630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g407 446 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Vvi8g407 446 ProSiteProfiles AGC-kinase C-terminal domain profile. 373 441 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi8g407 446 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 1 109 - -
Vvi8g407 446 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 109 443 - -
Vvi8g407 446 CDD STKc_AGC 122 372 IPR045270 GO:0004674|GO:0005524
Vvi8g407 446 ProSiteProfiles Protein kinase domain profile. 116 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g407 446 SUPERFAMILY Protein kinase-like (PK-like) 113 436 IPR011009 -
Vvi8g407 446 Gene3D Phosphorylase Kinase; domain 1 113 414 - -
Vvi8g407 446 Gene3D Transferase(Phosphotransferase) domain 1 196 391 - -
Vvi8g407 446 SMART pkinase_C_6 373 433 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi8g407 446 ProSiteProfiles Intein N-terminal splicing motif profile. 104 177 IPR006141 GO:0016539
Vvi8g407 446 SMART serkin_6 116 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g407 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vvi8g407 446 Pfam Protein kinase domain 116 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g407 446 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 109 - -
Vvi8g407 446 PANTHER RIBOSOMAL PROTEIN S6 KINASE 109 443 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76811 PF00069 Pkinase 2.00E-75 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g407 K04688 - vvi:100258607 856.67