Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g407 | ATGGTTTTCTCTGATGTACCTGGTTTGACCAAAACCAGAATGTGCAAACCAATCCAGAACCAGCTACTTTTTCCTATGAACCCCACTGATATTGTCCCCTTGGATCATGTTGAGTTAGATTTTGCTGATGTGTTTGGTCCTCTACCAGTCCAGACACCCACAGATACAAATGATCTCATTTATGGTGATCCAGTTGTTATTTATAGCCGGTCACATTCTTTGGTTGGCCCCTCAACTTGTCTTAGTCAATCATTGAAGCTCAGCAAGCTCGCTTTACATGAGATAGAGGATTCAGAGGAACTTGTGGAGTGTCTTCATGAAGAGGCTACTGTGGGCCTTGAGGATTTTGAAGTTATGAAGCTTGTTGGGCAGGGTGCATTTGGAAAAGTATTCCAGGTGAGGAAGAGAAATACATCAGAAATATATGCAATGAAGGTCATGCGGAAAGATAAGATTATGGAGAAAGATCATGCTGAATATATGAAAGCTGAAAGGGATATTTTAACAAAAGTAGATCACCCCTTCATCGTCCAGCTCCGATACTCGTTTCAGACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAGAGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCATCTTCACGCAAATGGAATAATGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCATGCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGATCAAATTCAATGTGTGGAACTGTAGAATATATGTCACCTGAAATTTTTCTTGGGAAAGGTCATGATAAGGCTGCAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAGCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAAGATAAGATCAAGCTTCCAGCCTTTTTGTCAAGTGATGCGCATTCTGTGTTGAAAGGGCTGCTACAAAAGGACCCAAGCAAGCGCCTGGGAAGTGGACCGTTGGGGATCGATGAAATCAAGCACCATAAGTGGTTCAAACCAATCAACTGGAGGAAGCTGGAGGCTCGTGAGATTCAGCCAAGTTTTCGTCCAGAAGTTGATGGAAAACTCTGCATTGCAAACTTTGAGAAGCGATGGACCGACATGCCATTGGCTGATTCTCCTGCTGCCAGCCCAAAAGCCAACGGAAATATCTTCACAGGCTTCACCTATGTAAGGCCTGCGGCCTCTTTTCTTCGAAGGAATAGCCCCTTGAATTAA | 1341 | 43.18 | MVFSDVPGLTKTRMCKPIQNQLLFPMNPTDIVPLDHVELDFADVFGPLPVQTPTDTNDLIYGDPVVIYSRSHSLVGPSTCLSQSLKLSKLALHEIEDSEELVECLHEEATVGLEDFEVMKLVGQGAFGKVFQVRKRNTSEIYAMKVMRKDKIMEKDHAEYMKAERDILTKVDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYNHGLFREDLARIYAAEIVSAVSHLHANGIMHRDLKPENILLDADGHAMLTDFGLAKEFDENTRSNSMCGTVEYMSPEIFLGKGHDKAADWWSVGILLFEMLTGKPPFIGGNRQKIQQKIIKDKIKLPAFLSSDAHSVLKGLLQKDPSKRLGSGPLGIDEIKHHKWFKPINWRKLEAREIQPSFRPEVDGKLCIANFEKRWTDMPLADSPAASPKANGNIFTGFTYVRPAASFLRRNSPLN* | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 10896653 | 10902936 | + | Vvi8g407 | Vvi8g407 | 790630 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g407 | 446 | ProSitePatterns | Protein kinases ATP-binding region signature. | 122 | 145 | IPR017441 | GO:0005524 | |
Vvi8g407 | 446 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 373 | 441 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Vvi8g407 | 446 | PANTHER | SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 | 1 | 109 | - | - | |
Vvi8g407 | 446 | PANTHER | SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 | 109 | 443 | - | - | |
Vvi8g407 | 446 | CDD | STKc_AGC | 122 | 372 | IPR045270 | GO:0004674|GO:0005524 | |
Vvi8g407 | 446 | ProSiteProfiles | Protein kinase domain profile. | 116 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi8g407 | 446 | SUPERFAMILY | Protein kinase-like (PK-like) | 113 | 436 | IPR011009 | - | |
Vvi8g407 | 446 | Gene3D | Phosphorylase Kinase; domain 1 | 113 | 414 | - | - | |
Vvi8g407 | 446 | Gene3D | Transferase(Phosphotransferase) domain 1 | 196 | 391 | - | - | |
Vvi8g407 | 446 | SMART | pkinase_C_6 | 373 | 433 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Vvi8g407 | 446 | ProSiteProfiles | Intein N-terminal splicing motif profile. | 104 | 177 | IPR006141 | GO:0016539 | |
Vvi8g407 | 446 | SMART | serkin_6 | 116 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi8g407 | 446 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 235 | 247 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi8g407 | 446 | Pfam | Protein kinase domain | 116 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi8g407 | 446 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 1 | 109 | - | - | |
Vvi8g407 | 446 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 109 | 443 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76811 | PF00069 | Pkinase | 2.00E-75 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g407 | K04688 | - | vvi:100258607 | 856.67 |