Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g415 ATGAAGCTACACTCTTTTGCAGCATTACTTTTTTCCATACTATTGTTTCTCCATCAAACTATTGCTGATCTGGAGTCAGACAAACAAGCGCTCCTTGAGTTTGCCTTTGTTGTCCCTCATGTTCGCACAATCAACTGGAGTCCGGCTACTGCAATCTGCATCTCTTGGGTTGGCATCAAATGCGATGGTAACCGTGTAGTTGCCCTCCGGCTACCTGGTGTTGGCCTCTATGGTCCCATTCCAGCCAACACACTTGGGAAGCTGGATGCTCTTAAGACCCTCAGCCTCCGTTCCAACCACCTCAATGGGAATCTTCCATCTGATGTTCTGTCCCTCCCTTCTCTGCAGTACATGTACCTCCAACATAACAATTTTTCAGGTAATATTCCTTCCTCTCTTCCACCCCTGCTCATCTTGCTTGATCTCTCCTTCAATTCCATTGTGGGCAACATTCCAGCCACAATTCAGAACTTAACGCATCTCACTGGATTAAACCTCCAAAACAATTCCCTAACTGGGCCCATCCCTGTTATCAACCTCCCAAGGCTTAACCATGTGAATTTGAGCTATAACGACCTTAACGGTTCAATTCCATATTTCTTCCGCAAGTTCCCTGCTTCCTCTTTTGAAGGGAACTCTCTGTTATGTGGACAGCCACTAAACCATTGCTCTTCAGTCACTCCCTCGCCTTCTCCTTCCCCATCTTCCATACCATCCCCAGCAACAGTTTCTCCAGAGCCAAGAGCTAGCAACAAGAAGAAACTAAGTATAGGGGCTATTATTGCCATTGCAATTGGGGGTTCTGCAGTGTTGTGTCTCCTATTTGTGGTGATACTGCTATGCTGTCTGAAGAAAAAAGATGGTGAAGGTACTGTCTTACAGAAAGGAAAGTCCCTGAGCAGTGGAAAGAGTGAAAAGCCTAAGGAGGACTTTGGGAGTGGGGTGCAAGAGCCCGAGAAGAACAAGTTAGCTTTCTTCGAAGGCTCCTCCTATAATTTTGATCTTGAGGATTTGTTAAGGGCCTCTGCAGAAGTACTGGGAAAGGGAAGCTATGGGACGGCCTACAAGGCCATCTTGGAGGAGGGAACAATTGTGGTTGTGAAGAGGTTGAAAGAAGTGGCAGCGGGCAAAAGAGAGTTTGAACAACACATGGAGATTGTGGGGAGGGTCAGTTGCCACCCAAATGTCGTGCCTCTTCGTGCTTACTACTACTCAAAGGATGAGAAGCTCCTGGTTTATGACTACATAACGGGCGGCAGCTTGTTTGCACTATTGCATGGGAACAGGGATCCTGAGAAAACACTGCTGAACTGGGAATCCAGAGTAAAGATTGCCCTTGGAACTGCAAAGGGTATTGTTCATATCCACTCTGCCAATGGTGGGAAATTCACCCATGGCAATATCAAGTCCTCCAATGTCCTCCTCACCCAAGACGTTGATGGCCAAATCTCAGATTTTGGCCTGACATCTCTGATGAACTACCCTTTGGTCACATCTAGAAGCCTTGGTTACCGAGCTCCTGAGGTGATTGAAACTCGGAAATCTACTCAAAAGTCCGATGTTTACAGTTACGGTGTGCTCCTCCTTGAGATGCTTACAGGCAAGGCACCAGTACAGTCACCTGGGCGTGATGATGTGGTTGATCTCCCAAGATGGGTCCAGTCTGTTGTTCGAGAGGAATGGACGGCTGAGGTGTTTGATGTAGAGCTGATGAAGGATCAAAGTTATGAAGAAGAGATGGTGCAAATGCTTCAGATCGCAATGGCCTGTGTGGCAAAGATGCCAGACATGAGGCCTAAGATGGAGGAAGTTGTTAGGCTGATGGAAGAAATCCGGCCATCAGACTCAGAAAACCGGCCATCCTCCGACAACCAATCCAAGGGCTCCACCGCACAAACCCCATGA 1905 47.56 MKLHSFAALLFSILLFLHQTIADLESDKQALLEFAFVVPHVRTINWSPATAICISWVGIKCDGNRVVALRLPGVGLYGPIPANTLGKLDALKTLSLRSNHLNGNLPSDVLSLPSLQYMYLQHNNFSGNIPSSLPPLLILLDLSFNSIVGNIPATIQNLTHLTGLNLQNNSLTGPIPVINLPRLNHVNLSYNDLNGSIPYFFRKFPASSFEGNSLLCGQPLNHCSSVTPSPSPSPSSIPSPATVSPEPRASNKKKLSIGAIIAIAIGGSAVLCLLFVVILLCCLKKKDGEGTVLQKGKSLSSGKSEKPKEDFGSGVQEPEKNKLAFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEEGTIVVVKRLKEVAAGKREFEQHMEIVGRVSCHPNVVPLRAYYYSKDEKLLVYDYITGGSLFALLHGNRDPEKTLLNWESRVKIALGTAKGIVHIHSANGGKFTHGNIKSSNVLLTQDVDGQISDFGLTSLMNYPLVTSRSLGYRAPEVIETRKSTQKSDVYSYGVLLLEMLTGKAPVQSPGRDDVVDLPRWVQSVVREEWTAEVFDVELMKDQSYEEEMVQMLQIAMACVAKMPDMRPKMEEVVRLMEEIRPSDSENRPSSDNQSKGSTAQTP* 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10966631 10972180 - Vvi8g415 Vvi8g415 790638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g415 634 PANTHER RECEPTOR-LIKE KINASE 7 634 - -
Vvi8g415 634 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Vvi8g415 634 MobiDBLite consensus disorder prediction 608 634 - -
Vvi8g415 634 Gene3D Ribonuclease Inhibitor 137 225 IPR032675 -
Vvi8g415 634 Gene3D Transferase(Phosphotransferase) domain 1 416 632 - -
Vvi8g415 634 MobiDBLite consensus disorder prediction 618 634 - -
Vvi8g415 634 MobiDBLite consensus disorder prediction 301 315 - -
Vvi8g415 634 SUPERFAMILY Protein kinase-like (PK-like) 344 608 IPR011009 -
Vvi8g415 634 ProSiteProfiles Protein kinase domain profile. 340 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g415 634 SUPERFAMILY L domain-like 37 220 - -
Vvi8g415 634 ProSitePatterns Protein kinases ATP-binding region signature. 346 377 IPR017441 GO:0005524
Vvi8g415 634 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Vvi8g415 634 MobiDBLite consensus disorder prediction 293 315 - -
Vvi8g415 634 MobiDBLite consensus disorder prediction 226 249 - -
Vvi8g415 634 PANTHER OS05G0588300 PROTEIN 7 634 - -
Vvi8g415 634 Gene3D Phosphorylase Kinase; domain 1 308 415 - -
Vvi8g415 634 Pfam Protein kinase domain 343 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g415 634 CDD STKc_IRAK 346 611 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g776 Vvi8g415 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76813 PF00069 Pkinase 1.90E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g415 - - vvi:100255050 1180.62