Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g469 ATGGACCCTCAATACATTGGGAGGTTTGTCAGGTGTACGGTGTTTTCGAAGCTGGTGTCAGAGTGCTTGAGTGAGAAGTGGCTGTCTACGCCAATACACGTTTCAATTTTTTTCCCTTTGCTTTGTCTCGCTCGACGCCTTCACATCGTCCCCGTTTTTTTTTTATGGTCTTCGTCATATTCATCTTCAATGGATGAAACTATGGGGAGTATGCCTTCTCAAAAAACTCTAGGGAATTATAGATTGGGAAAGACACTCGGAATTGGGGCCTTTGGTAAAGTGAAGGTTGCACTTCATACAACAACAAAGCTAAAAGTTGCTATTAAGATCCTTGATCGCCAATCTATTGATGATTCGACGGCAGACAGAGTGAAACGAGAGATTAATATATTGAGGTTATTTTCACATCCTCATATAGTTCGTCTTTATGAGGTCATAGAGACAAGGACAAAAATTTATGTTGTCATGGAGTACATGAATTCTGGTGAGCTATTTGATTATATTACAGAGAATGATAGACTCCAAGAGGATGAGGCTCGCCACTTTTTTCAACAGATTATTTCAGGTGTTGAATGTTGCCATGTCAATATGGTGGTTCACCGAGACCTCAAGCCAGAGAATTTACTCTTGGATACAAAACGCAATGTCAAAGTTGCAGACTTTGGACTCAGCAATGTGATGCGTGATGGTCATTTTCTCAAAACAAGCTGTGGAAGTCCAAATTATGCTGCTCCTGAGGTTATTTCTGAACAACTATATTCTGGTCCTGAGGTTGATGTTTGGAGTTGTGGTGTCATTTTATTTGCTCTTCTCTGTGGAAGGCTTCCTTTTGATGCTGATAGTCTTTCGGGTTTATATGCAAAAATAAAGAGTGGAATATACACATTCCCAAATCATTTATCTCGTGCTGCTCGGGATTTGATTGCTCGGATACTTGTAGTAGATCCGATCAAACGTATTTCAATTCCTGAGATACGCCGGCATCCTTGGTTTCAACAGCATCTTCCCAAATACATAGCTCTGCGCACAATAGATGCCATATACACTACAAATAAGGTTGATGAGGAAATTGTCCAACAGGTGGTAAAGATAGGCTTTGACATTAATGAAGTGATCCAGTCTCTTCAAAATAGACTGCAAAATGAGGCAACAGTTGCATATCATTTGCTGTTGGACAATCATTTTCGAATCCATTGCAGTTACCTTAAAAATGAATTTATAGAATCCTTGCCACAGGATCCCAACCCCACTGATCATCCTGAAATGCAAATGAGTTCACTGGCTCCCATGCAACGACAATGGGCACTTGGATTGAAGTCTCAAGCACGTCCCATCGAAACAATGACAACTGTTTTGAAGGTTTTTGAGAGATTGAATGTTAAATGGAAGAAGATAGGTCCTTACAACATGAAATGTCTTTGGATACCACCATTAGCTGCCTATCCCAAGTTGACAGTTGGCAATGATCCTGCACAAGATCACATCTATAGTGTGGATCCATCAATTATGGCCATGAACAAAAGAGCAATTAGATCGCAAAATGCTGTGAAGTTTGAAATTCAGCTTTATAAAACAAATGACAATCGGTATCTTCTGGATTCGCAATTGCTTCATGGGCCGCCCTTTATGTTCCTAGAAATCTGTGCAGCATTTGTTGGAATGGCAGCGGCATAA 1674 40.38 MDPQYIGRFVRCTVFSKLVSECLSEKWLSTPIHVSIFFPLLCLARRLHIVPVFFLWSSSYSSSMDETMGSMPSQKTLGNYRLGKTLGIGAFGKVKVALHTTTKLKVAIKILDRQSIDDSTADRVKREINILRLFSHPHIVRLYEVIETRTKIYVVMEYMNSGELFDYITENDRLQEDEARHFFQQIISGVECCHVNMVVHRDLKPENLLLDTKRNVKVADFGLSNVMRDGHFLKTSCGSPNYAAPEVISEQLYSGPEVDVWSCGVILFALLCGRLPFDADSLSGLYAKIKSGIYTFPNHLSRAARDLIARILVVDPIKRISIPEIRRHPWFQQHLPKYIALRTIDAIYTTNKVDEEIVQQVVKIGFDINEVIQSLQNRLQNEATVAYHLLLDNHFRIHCSYLKNEFIESLPQDPNPTDHPEMQMSSLAPMQRQWALGLKSQARPIETMTTVLKVFERLNVKWKKIGPYNMKCLWIPPLAAYPKLTVGNDPAQDHIYSVDPSIMAMNKRAIRSQNAVKFEIQLYKTNDNRYLLDSQLLHGPPFMFLEICAAFVGMAAA* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11653178 11663169 + Vvi8g469 Vvi8g469 790692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g469 557 PANTHER SERINE/THREONINE KINASE 76 550 - -
Vvi8g469 557 CDD AMPKA_C 431 552 - -
Vvi8g469 557 ProSiteProfiles Protein kinase domain profile. 80 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g469 557 SUPERFAMILY Protein kinase-like (PK-like) 76 367 IPR011009 -
Vvi8g469 557 SMART serkin_6 80 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g469 557 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 352 392 IPR015940 -
Vvi8g469 557 CDD STKc_AMPK_alpha 77 331 - -
Vvi8g469 557 Pfam Kinase associated domain 1 515 552 IPR001772 -
Vvi8g469 557 Gene3D Transferase(Phosphotransferase) domain 1 71 409 - -
Vvi8g469 557 SMART uba_6 354 391 IPR015940 -
Vvi8g469 557 CDD UBA_SnRK1_plant 353 393 - -
Vvi8g469 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vvi8g469 557 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 76 550 - -
Vvi8g469 557 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 509 557 IPR001772 -
Vvi8g469 557 Pfam Protein kinase domain 80 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g469 557 Gene3D Kinase associated domain 1, KA1 437 556 - -
Vvi8g469 557 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Vvi8g469 557 SUPERFAMILY KA1-like 388 552 IPR028375 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g908 Vvi8g469 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76814 PF00069 Pkinase 2.00E-77 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g469 K07198 - vvi:100243154 997.653