Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g473 ATGGGCGTGGAAATTGTTCAGCCAAACACTTGCTTCAGAGGCTGTTGCAGCAGCGAATCAATTCCCCTTTGTCTTCCTTCTTCTTTCTACTCTCTCCTTTCCCCAATCGCCCGAGGGGCGGAGAGCGTTGTTTATGAAGCTTGTTTGGATGGGAAGAAAGTTGCTGTCAAGAAACCCATCTTGTCTACTTCTCAAGACATTGATAAATTCCACAAGGAGTTGCAACTCTTATGCAAGCTAGATCATCCGGGGATAGCGAAACTAGTTGCGGCACACGCAAAGCCTCCAAATTACATGTTCTTCTTTGAATTCTATGAATCTGGCAATCTTGCTGACAAACTACATGTGGAAGAATGGAGCCCGGGTATCGATCAGGCTTTCATGATCACCGTCCAGTTAGCAAGAGCTCTGCAATATCTACATAACCTTGGGATTATACATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAAAATTTTACCCACACCTGGCAGATTTTGGTCTGGCAGAATACAAGGCAGATCTGAAACAAGTTTCAACTGAAAATTGGCGATCATCTGGAAAGCCAACTGGTGGCTTCCATAAGAAGAACATGGTTGGGACACTAATTTATATGGCACCTGAAATATTGAGGAAGGAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAATGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTGTGGCATCTGAAGGATTGCGACCAGTTCTTGCTGGCTTGGAGTCAGCTGCACCAGCAAGGTTACTATCATTGATACAGAGGTGTTGGGATGCAAATCCCCAAAATAGGCCTTCTTTTGATGAGATAGTAATGGAACTTGATCCAATATTGGAGCACAGGAAGACAGTAAAAGAGAAGGAAAATATCCTTGGAGAACCTTCTATTTTTCCTGCTGACCAGCACATAAATGATGCCACTAATCTTCGAACATACCAGGAAAGCATTAACTGGGTTGCTCAGGGGGAAAATTTTTCCAAGATAGCTTCTTCTGTAGCTGATTCTAGTGTTGAAATGTGGTTTGATTCTTCAAATGATCCTTTAACATACCGTCCAATACTATCTTGGGGATCCTTTGCTACGTGCGGGAGGAGGGAGACCATGGAGGATACTCACTTTCTTATGCCCAATATGTTCAATGAGGAAGATATCCATGTTTTTGGTATCTTTGATGGTCATCGAGGTGCAGCAGCGGCTGAGTTTTCAGCTCGGGCTCTTCCTGGATATTTGAAAACTCTGGGTTCCAGAAGCAGTCCTGCTGATGCATTATTGGAAGCATTTGTCAAAACAGATGTTGCATTTAGGAATGAACTGGATTCCTGTCGTAAATCTAAGGGAGTTATTCAGAAAGACTGGCATCCTGGCTGCACCGCAGTTGCTGCCCTAATAGTTAGAAACAAGCTTTTTGTTGCTAATGCTGGTGATTGCAGGACAATCTTATGTCGAGCTGGCTGTGCTTTTGCTTTAAGTAAGGACCATGTCGCAAGCTGTCTTGAGGAGCGAGAACGTGTTACCAATGCAGGGGGACAAGTCAAATGGCAAGTTGATACATGGAGGGTTGGTCCTGCTGCTCTTCAGGTTACACGTTCCATAGGTGATGATGATCTGAAGCCTGCTGTAACTGCAGAACCTGAGATAACTGAAACTATTCTGTCGGTGGAGGATGAATTCCTGGTAATGGCAAGCGATGGGCTCTGGGATGTTGTGAGCAATGCAGAGGTTGTGAGCATAATCAGGGACACTGTTAAAGAGCCTGGAATGTGCTCCAAGAGACTGGCAACCGAAGCAGCTGAACGTGGTAGCAAAGATAACATCACTGTCATCGTCATCTTCCTGCGCCCAGTTTCTACGGCAGAAAGAATTTACTAG 1980 44.34 MGVEIVQPNTCFRGCCSSESIPLCLPSSFYSLLSPIARGAESVVYEACLDGKKVAVKKPILSTSQDIDKFHKELQLLCKLDHPGIAKLVAAHAKPPNYMFFFEFYESGNLADKLHVEEWSPGIDQAFMITVQLARALQYLHNLGIIHRDVKPANVLLDKKFYPHLADFGLAEYKADLKQVSTENWRSSGKPTGGFHKKNMVGTLIYMAPEILRKEIHTEKSDVYSFGVSINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVASEGLRPVLAGLESAAPARLLSLIQRCWDANPQNRPSFDEIVMELDPILEHRKTVKEKENILGEPSIFPADQHINDATNLRTYQESINWVAQGENFSKIASSVADSSVEMWFDSSNDPLTYRPILSWGSFATCGRRETMEDTHFLMPNMFNEEDIHVFGIFDGHRGAAAAEFSARALPGYLKTLGSRSSPADALLEAFVKTDVAFRNELDSCRKSKGVIQKDWHPGCTAVAALIVRNKLFVANAGDCRTILCRAGCAFALSKDHVASCLEERERVTNAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETILSVEDEFLVMASDGLWDVVSNAEVVSIIRDTVKEPGMCSKRLATEAAERGSKDNITVIVIFLRPVSTAERIY* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11715073 11728228 - Vvi8g473 Vvi8g473 790696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g473 659 Pfam Protein phosphatase 2C 396 642 IPR001932 -
Vvi8g473 659 Gene3D - 385 654 IPR036457 -
Vvi8g473 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vvi8g473 659 SUPERFAMILY PP2C-like 386 651 IPR036457 -
Vvi8g473 659 SMART serkin_6 30 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g473 659 SMART PP2C_4 382 647 IPR001932 -
Vvi8g473 659 SMART PP2C_SIG_2 407 649 IPR001932 -
Vvi8g473 659 SUPERFAMILY Protein kinase-like (PK-like) 25 322 IPR011009 -
Vvi8g473 659 Gene3D Transferase(Phosphotransferase) domain 1 23 337 - -
Vvi8g473 659 ProSiteProfiles PPM-type phosphatase domain profile. 392 649 IPR001932 -
Vvi8g473 659 PANTHER PROTEIN PHOSPHATASE 2C 1 659 IPR015655 GO:0004722|GO:0006470
Vvi8g473 659 ProSiteProfiles Protein kinase domain profile. 30 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g473 659 Pfam Protein kinase domain 31 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g473 659 CDD PP2Cc 394 649 IPR001932 -
Vvi8g473 659 PANTHER - 1 659 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76815 PF00069 Pkinase 3.60E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g473 - - vvi:100253351 1314.29