Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g484 ATGGGTTGTGGCTTCAAAATGGAGGTTTCTCCAAACCCTAATCCCTCAGCGGACTCTGAACCACTGGCAGTGCCGCCTCTGGACCCGGACTTCTTCTCTGATAACAGCAACGACGCTGCCCTGCATGAAACCTTCATGTCTGATCTAGGTTTGGACGGCGTCGACTTCGATTTCACCTTCGACGACCTCTACTTCCCATCTGAATCCGAAGATTTTCTTGCCGATTTTCCTTTGCCCGAGGAAGGTTCTGGTGGTCATGATTCTGCAGATCGGAGCTTTGATGTTTCCGGAGACCGGAATTCCGATGTTTCTTCTATTGAGTTGGGCTGTTGTGATCAGAAGCTTTCTCCGCCGGTGGCATCTCAGAGTTCCAGCGATCAGAATTTGGATGTGAATTCCCCGTTGTTGGATTCTGGTAATTCCGATCATTCTAGTTGGGTTCCATCTTCGCCCAATTTGGCCGATAATTCGTGGGGTGTTGTTGATCAGAAAGTTAAATTGGAAGATTCTGGGAAAAATTCTGTGCCCAAGAGGAAAAAAGAACAGGATGACTCAACAACTGAATCAAGGAGCAGCAAATTTCGGAGATCGTCCATATGCAGCGAAACCGCCAATGCATCGAACGACGAAGAGGAGAAAAAGAAGGCAAGATTGATGAGGAATCGTGAAAGCGCCCAGCTTTCTAGGCAGAGAAAGAAGCATTATGTAGAGGAGCTTGAGGAAAAGATAAGATCAATGCATTCAACAATTCAAGATTTGACTGGTAAGATTTCAATTATAATGGCTGAAAATGCAAATCTTAGGCAACAATTCGGTGGTGGCGGCATGTGCCCACCACCACATGCCGGCATGTACCCTCATCCTTCAATGGCACCCATGGCTTATCCGTGGGTACCTTGTGCACCATATGTAGTGAAGCCGCAAGGGTCTCAAGTACCATTGGTTCCAATACCTAGATTGAAACCACAGGCTCCTGTCTCGGCCCCAAAGGTTAAGAAAACGGAGAATAAGAAGAATGAGACTAAAAGTAAGAAGGTTGTCAGTGTTAGTTTGCTTGGCATGCTGTCTTTTATGTTCCTTATGGGATGTCTGGTACCCTTTGTCAACATCAAGTATGGAGGAATTAAGGAAACTGTTCCTGGTAGATCTGATTATATTAGCAATAGGTTTTCTGATATGCACCGCAGGAGGATTTTGACAGTTAAGGACGATTTGAATGGGTCAAATTATGGCATGGGAGTGGGATTTGATGATAGAATTCATAGAGGATCAAAGCCATTACCTGGTTCAGATGGGTACGCTCATTCACGTAATGCTAGTGAGCCTCTTGTTGCTTCACTTTATGTACCTAGAAATGATAAGCTTGTGAAGATTGATGGCAACTTGATAATTCATTCTGTTCTGGCCAGTGAGAAAGCCATGGCATCTCATGCAGCTCTTGCTAAGAAGAGTCCTAAACCTTCTGTTTCTTTGGCTAATGATGTTAGAGAGACTGGTCTAGCAATTGCTGGAAATTTGGCTACAGCATTCCCTGTTTCTGAACCCACGTCAACCGATGGTAAACTGCAACAGTGGTTCCGTGAAGGCCTTGCAGGGCCAATGTTGAGCTCTGGCATGTGCACCGAAGTTTTCCAGTTTGATGTTTCACCAGCTCCTGGAGCCATAGTACCAGTCTCCTCAGTGGCCAACATCTCTGCAGAAAACCAGCAGAATGCTACTCACCTAAACAAGGGAAGGAATAGAAGGATCCTCCACGGTCTTCCCATACCCCTTGCTGGATCCACCCACAACATTACTGAAGAAGGCATGGGAAGAAATTCACAGAAAGACAACTTTCAAGGCAGTAATAAAAATGTCTCTTCTATGGTTGTTTCTGTTCTTTTTGATCCCAGGGAGGCTGGCGACAGTGATGGTGATGGCATGATGGGTCCCAAATCCCTCTCGAGAATATTTGTTGTTGTGCTTCTAGATAGCGTCAAGTATGTAACTTACTCATGTGGACTTCCGCTGAAGGCGTCTGCTCCTCATCTGGTGACTAAATGA 2043 45.57 MGCGFKMEVSPNPNPSADSEPLAVPPLDPDFFSDNSNDAALHETFMSDLGLDGVDFDFTFDDLYFPSESEDFLADFPLPEEGSGGHDSADRSFDVSGDRNSDVSSIELGCCDQKLSPPVASQSSSDQNLDVNSPLLDSGNSDHSSWVPSSPNLADNSWGVVDQKVKLEDSGKNSVPKRKKEQDDSTTESRSSKFRRSSICSETANASNDEEEKKKARLMRNRESAQLSRQRKKHYVEELEEKIRSMHSTIQDLTGKISIIMAENANLRQQFGGGGMCPPPHAGMYPHPSMAPMAYPWVPCAPYVVKPQGSQVPLVPIPRLKPQAPVSAPKVKKTENKKNETKSKKVVSVSLLGMLSFMFLMGCLVPFVNIKYGGIKETVPGRSDYISNRFSDMHRRRILTVKDDLNGSNYGMGVGFDDRIHRGSKPLPGSDGYAHSRNASEPLVASLYVPRNDKLVKIDGNLIIHSVLASEKAMASHAALAKKSPKPSVSLANDVRETGLAIAGNLATAFPVSEPTSTDGKLQQWFREGLAGPMLSSGMCTEVFQFDVSPAPGAIVPVSSVANISAENQQNATHLNKGRNRRILHGLPIPLAGSTHNITEEGMGRNSQKDNFQGSNKNVSSMVVSVLFDPREAGDSDGDGMMGPKSLSRIFVVVLLDSVKYVTYSCGLPLKASAPHLVTK* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11857566 11860728 - Vvi8g484 Vvi8g484 790707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g484 680 Coils Coil 236 270 - -
Vvi8g484 680 Coils Coil 201 228 - -
Vvi8g484 680 CDD bZIP_HY5-like 214 265 - -
Vvi8g484 680 MobiDBLite consensus disorder prediction 116 157 - -
Vvi8g484 680 PANTHER BZIP TRANSCRIPTION FACTOR 60-LIKE 131 514 - -
Vvi8g484 680 PANTHER BZIP TRANSCRIPTION FACTOR 60-LIKE 1 132 - -
Vvi8g484 680 PANTHER BZIP TRANSCRIPTION FACTOR 60-LIKE 521 679 - -
Vvi8g484 680 Pfam bZIP transcription factor 210 270 IPR004827 GO:0003700|GO:0006355
Vvi8g484 680 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 211 271 IPR004827 GO:0003700|GO:0006355
Vvi8g484 680 MobiDBLite consensus disorder prediction 1 31 - -
Vvi8g484 680 Gene3D - 211 272 - -
Vvi8g484 680 MobiDBLite consensus disorder prediction 74 213 - -
Vvi8g484 680 SUPERFAMILY Leucine zipper domain 213 271 IPR046347 GO:0003700|GO:0006355
Vvi8g484 680 PANTHER BZIP TRANSCRIPTION FACTOR 1 132 - -
Vvi8g484 680 PANTHER BZIP TRANSCRIPTION FACTOR 521 679 - -
Vvi8g484 680 PANTHER BZIP TRANSCRIPTION FACTOR 131 514 - -
Vvi8g484 680 SMART brlzneu 209 273 IPR004827 GO:0003700|GO:0006355
Vvi8g484 680 MobiDBLite consensus disorder prediction 165 191 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15172 PF00170 bZIP_1 2.00E-10 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g484 K25783 - vvi:100248184 1196.42