Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g488 ATGCCTTCAAAGACAAAGAAGCATTCCAAGTCATTATCGAAGCTCTCGTATTCTGATAAGTCAGAATCTCCGTCTGTTTCATCAGTGTTGACACCACCGCCTGATTTAGAAATTAGCGAAGAAGATCTCCTACGGTATCTTGATGAGGCTTCAAGCAAATGCCCTTCTCTGATTGGGAAATCTGCTTTCATTGGCCGAGTCACAGGTGTTGACCCTGATTCAAAAGGCTGTAAAATTTGGCTTTCAGAACCTTCTATGGTTGCTTTTAACCTTGCCCCTGGTTCTACTGTTTCGGTGTCACTTGCCTCGTCAAAGAAGAAATTTTCAAATGGCTTTCCTCTCAGCTCATTAACAGATGAAAGTACTAGACATTTTCAAGTTGATTCTGGGAATAAAATGCCTGGTGAAGCAGGGAACTACTTTGCTCTTGCTACAGTTTTTCCTTCTTGTAAGGTGTTGAAGAATGGGGTACGGCTTTCGTTGAACCTTTATCATACTATGGGTTCTCCTGCTTCAGCCAGGATTGTGTTTGTTTACCTTATCCAAAGTCAATCTGTTACTGGTTTTGTAAATGGAAGTCGTAAATCACACAGCACGACAATTAATGGTCTCTCACTATACAAGTGCAAGGAGTTATATTTAGAGATGATTCCTTCAAAGAATGGATCGACGGTGAACAGTGATATGCAGTCAACTGTTCAAGTTTCTACTGAAACAACAAATTATCAAGTTAGCAATGGAGCTGCCTCATCGCCTAAGACACCAGTGTCATATCAGTCAAAGCTTATTTCTCCTAATTCTAATCAGTTGACTTCACCTATATGTGACGATTCAGTGTCAAGTTTATCCAATCCAAATAACAAAATTTTTGCTTCATTTGACATAACAGAAGTATTAGGTGATGAAACTGCAAAGAAACTTTTGCAGTCATGTGCTGCTTCATGGTTATACTCTCGCAGTTTACTCACCGGGAATCTTGTGACAATCCCAATACTTTCAGAACTTTGCACTTTCTGTGTGAGAGGTGCTATTAAATTGTCACCTGATATGAGCCATGTGGATGATGCTTGTGTTGTAGACCGTGAAACAAAAGTATATTTATATTTGCCATCAAATTCATCATCAGAGACTCCACAGAAAGGACGTCCACCACATGTGGAGCTTGAATTTAAGAATTTCAAAGCTAACGTTGGAAGTGCTGTTAAATTGGGTGGTCTATCAGAGGAATATGCAGTTCTAAAGGATATCATAATTTCCACATCAGTGAAAAACACTCTGTCAAGTATGGGTTTGCGAACTACAAAAGGAGTGCTTCTTCATGGTCCACCTGGTACGGGAAAGACTTCTTTGGCTCAATTATGTATTTGTGATGCTGGTGTCAACCTTTTCTCTGTAAATGGAGCTGAAATTGTTAGTCAATACTATGGAGAGAGTGAGCAAGCATTGCATGAAATTTTTGATTCAGCTAGCCAAGCTGCACCTGCTGTGGTGTTCATTGATGAGTTGGATGCCATCGCCCCTGCACGCAAAGATGGAGGGGAAGAGCTATCTCATAGAATAGTTGCCACATTATTGAATTTGATGGATGGGATCAGTAGAACTGATGGGATACTTGTAATTGCTGCTACCAACAGGCCTGATAGTATTGAGCCTGCACTCAGACGGCCTGGAAGACTGGACAGGGAAATGGAAATTGGTGTCCCATCTCCTGGGCAACGATATGATATTTTACTCAACCTCCTTAGTGAAATGGAAAACTCTCTTTCGGACATGCAAATTCAACAGCTTGCTACAGTTACCCATGGTTTTGTGGGTGCTGATTTAGCCGCCCTTTGCAACGAGGCAGCCTTGGTTTGTCTGAGGCGCTATGTTAAGTCCTTTATAATGGAAGAAGAATGCATGTTGGTAGTCACTTTTGAGGACTTTGAAAAGGCTAGGATGAAAATAAGGCCTAGTGCTATGCGAGAGGTAATACTTGAGGTTCCAAGGGTTAAGTGGGAAGATGTTGGTGGCCAAAATGAGGTTAAGGCACAGCTAATGGAAGCTGTAGAATGGCCTCAAAAACATCAGGATGCTTTCAAGCGTATTGGGACCCGCCCCCCAACAGGTGTATTGTTGTTTGGACCTCCAGGTTGCAGCAAAACCCTCATGGCTCGTGCAGTAGCTTCTGAGGCAGGTCTGAATTTCCTGGCTGTTAAGGGCCCCGAACTTTTCAGCAAATGGGTTGGTGAATCTGAAAAGGCTGTAAGGTCTCTGTTTGCAAAGGCTAGGGCCAATGCTCCATCTATTATATTTTTTGATGAAATAGATGGTCTTGCTGTTATTCGTGGGAAGGAAAGTGATGGGGTTTCGGTCGCTGACAGGGTTATGAGTCAACTTCTTGTTGAATTAGATGGTTTGCACCAACGAGTTGATGTTACTGTTATTGCTGCTACAAATCGGCCTGACAAGATTGATCCTGCTCTTCTAAGACCAGGACGCTTTGATCGGCTGTTATACGTGGGACCCCCAAATGAGAGCGATCGGGCAGATATATTCCACATTCATTTGTGTAAAATTCCATTCAGTTCTGATGTCAGCATAGGGGAGCTGGCTTTCCTCACTGAAGGCTATACTGGGGCTGATATATCATTAATCTGCCGGGAAGCAGCTATTGCAGCTATTGAAGATAACCTTGATGCTTCAGAAATAACTATGGAACACCTAAAGACTGCTATTAGACAAGTACAGCCATCAGAACTCCAATCTTACCAAGAGTTATCGACAAAATTTCAACGGCTTGTGCACTCTAGTGATAAAAGAGATGAATCAGGGCTTCCATTGCGCTCAAGTAAATCAACCTGGATGCCTCTCTGGAAATCAAATAATTGA 2871 42.25 MPSKTKKHSKSLSKLSYSDKSESPSVSSVLTPPPDLEISEEDLLRYLDEASSKCPSLIGKSAFIGRVTGVDPDSKGCKIWLSEPSMVAFNLAPGSTVSVSLASSKKKFSNGFPLSSLTDESTRHFQVDSGNKMPGEAGNYFALATVFPSCKVLKNGVRLSLNLYHTMGSPASARIVFVYLIQSQSVTGFVNGSRKSHSTTINGLSLYKCKELYLEMIPSKNGSTVNSDMQSTVQVSTETTNYQVSNGAASSPKTPVSYQSKLISPNSNQLTSPICDDSVSSLSNPNNKIFASFDITEVLGDETAKKLLQSCAASWLYSRSLLTGNLVTIPILSELCTFCVRGAIKLSPDMSHVDDACVVDRETKVYLYLPSNSSSETPQKGRPPHVELEFKNFKANVGSAVKLGGLSEEYAVLKDIIISTSVKNTLSSMGLRTTKGVLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAVVFIDELDAIAPARKDGGEELSHRIVATLLNLMDGISRTDGILVIAATNRPDSIEPALRRPGRLDREMEIGVPSPGQRYDILLNLLSEMENSLSDMQIQQLATVTHGFVGADLAALCNEAALVCLRRYVKSFIMEEECMLVVTFEDFEKARMKIRPSAMREVILEVPRVKWEDVGGQNEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVADRVMSQLLVELDGLHQRVDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESDRADIFHIHLCKIPFSSDVSIGELAFLTEGYTGADISLICREAAIAAIEDNLDASEITMEHLKTAIRQVQPSELQSYQELSTKFQRLVHSSDKRDESGLPLRSSKSTWMPLWKSNN* 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11900430 11919397 - Vvi8g488 Vvi8g488 790711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g488 956 MobiDBLite consensus disorder prediction 1 35 - -
Vvi8g488 956 Gene3D - 568 663 - -
Vvi8g488 956 MobiDBLite consensus disorder prediction 16 32 - -
Vvi8g488 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 656 IPR027417 -
Vvi8g488 956 Pfam AAA+ lid domain 858 903 IPR041569 -
Vvi8g488 956 Pfam AAA+ lid domain 592 643 IPR041569 -
Vvi8g488 956 CDD AAA 670 836 - -
Vvi8g488 956 PANTHER - 77 625 - -
Vvi8g488 956 PANTHER - 631 934 - -
Vvi8g488 956 PANTHER AAA-FAMILY ATPASE 631 934 - -
Vvi8g488 956 PANTHER AAA-FAMILY ATPASE 77 625 - -
Vvi8g488 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 915 IPR027417 -
Vvi8g488 956 ProSitePatterns AAA-protein family signature. 806 824 IPR003960 GO:0005524|GO:0016887
Vvi8g488 956 Pfam ATPase family associated with various cellular activities (AAA) 704 835 IPR003959 GO:0005524|GO:0016887
Vvi8g488 956 Pfam ATPase family associated with various cellular activities (AAA) 437 566 IPR003959 GO:0005524|GO:0016887
Vvi8g488 956 Gene3D - 390 566 IPR027417 -
Vvi8g488 956 Gene3D - 664 912 IPR027417 -
Vvi8g488 956 CDD AAA 404 566 - -
Vvi8g488 956 Coils Coil 885 905 - -
Vvi8g488 956 Gene3D - 837 907 - -
Vvi8g488 956 SMART AAA_5 433 569 IPR003593 -
Vvi8g488 956 SMART AAA_5 700 838 IPR003593 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g488 - - vvi:100256736 1154.43