Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g490 ATGGCTTCAAGACCCATTGTTCCGCAGCACCATCAACCCAGAGGTGAGGCATTAGCTGGGGATGGTAAGCAGAGGAAAAACGGGGCGGCTGAAGGGAGAAACCGCCGAGCCCTAGGCGACATTGGTAATCTTGTAACTGTTAGAGGAGTAGATGGCAAGCCACAGCCTCAGATCTCTCGTCCTGTTACTAGAAGTTTCTGCGCTCAATTACTTGCAAATGCACAAGCAGCTGCAGCAGCTGAAAATAACAAGAAAGCAGTCTGTGTTAACGTTGATGGAGCTCCCATCATCACCGATGGAGGGGCAGCAGGCAAAGCACCTGTGGCAGCAAAGGCGGCAGCCCAGAAGAAAGTCACAATTAAGCCAAAGCCTGAACAAGTGATTGAGATTAGCCCAGATTCGGAAGAGGTTAAGCAAGAGAAGCCTGTGAGCAAGAAAAAGGGCAGAGAAGGTTCATCAAAGAAAAATGTTAAAACCATGACTTCTATCCTTACTGCTAGGAGCAAGGTAGCTTGTGGCTTGACCAATAAACCAAAGGAGCAGATTGTTGACATTGATGCAGCAGATGCTGGTAATGACCTGGCTGCAGTGGAATATGTGGAGGACATTTACAAGTTCTATAAATTGATTGAGAGCGAGAGCCAAGTTCATGACTATATGGATTCCCAAGCCGAGATAAATGAGAAGATGAGAGCCATCTTGGTGGACTGGTTGATTGAAGTTCACCACAAATTTGAGCTTATGCCAGAGACTTTGTACCTCACAATCAACATTGTTGATCGTTTCCTTTCAATCAAGACTGTGCCAAGAAGGGAACTGCAGTTGGTGGGCATCAGTGCTATGCTTATGGCCTCCAAATATGAAGAAATTTGGGCCCCAGAGGTGAATGACTTCGTTTGCATCTCAGACAGAGCATACACGCATCAACAAATACTGATGATGGAGAAAGCCATACTGGGCAAGCTGGAATGGACCTTGACAGTCCCCACACCTTATGTTTTCCTTGTCCGATTCGTTAAGGCCTCAATCCCTGATACGCAGATGGAACACATGGTCTATTTCTTTGCTGAGCTTGGATTGACTAATTATGTCACCATGATGTACTGCCCATCAATGCTTGCTGCCTCAGCAGTCTATGCTGCTAGGTGCACCCTGAGCAAGAGCCCTGTTTGGGATGAAACACTGAAAGTCCACACGGGTTACTCAGAGACACAGCTGCTTGGTTGTGCCAAGCTCCTTGTGAGTTTCCACTCCATTGCTGCAGAGAACAAGCTTAAGGTGGTGTACAGAAAGTATTCCCAGCCTCAGCGAAGTGGGGTATCACTCCTTCCACCTGCAAAATCTCTCTTGGCTGCATCATGA 1362 47.21 MASRPIVPQHHQPRGEALAGDGKQRKNGAAEGRNRRALGDIGNLVTVRGVDGKPQPQISRPVTRSFCAQLLANAQAAAAAENNKKAVCVNVDGAPIITDGGAAGKAPVAAKAAAQKKVTIKPKPEQVIEISPDSEEVKQEKPVSKKKGREGSSKKNVKTMTSILTARSKVACGLTNKPKEQIVDIDAADAGNDLAAVEYVEDIYKFYKLIESESQVHDYMDSQAEINEKMRAILVDWLIEVHHKFELMPETLYLTINIVDRFLSIKTVPRRELQLVGISAMLMASKYEEIWAPEVNDFVCISDRAYTHQQILMMEKAILGKLEWTLTVPTPYVFLVRFVKASIPDTQMEHMVYFFAELGLTNYVTMMYCPSMLAASAVYAARCTLSKSPVWDETLKVHTGYSETQLLGCAKLLVSFHSIAAENKLKVVYRKYSQPQRSGVSLLPPAKSLLAAS* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11925224 11928422 - Vvi8g490 Vvi8g490 790713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g490 453 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 22 450 - -
Vvi8g490 453 MobiDBLite consensus disorder prediction 1 37 - -
Vvi8g490 453 Pfam Cyclin, N-terminal domain 202 326 IPR006671 -
Vvi8g490 453 Pfam Cyclin, C-terminal domain 329 445 IPR004367 -
Vvi8g490 453 ProSitePatterns Cyclins signature. 231 262 IPR006671 -
Vvi8g490 453 SUPERFAMILY Cyclin-like 328 448 IPR036915 -
Vvi8g490 453 Gene3D - 216 327 - -
Vvi8g490 453 Gene3D - 202 442 - -
Vvi8g490 453 PIRSF Cyclin_A_B_D_E 1 453 IPR039361 -
Vvi8g490 453 SUPERFAMILY Cyclin-like 192 326 IPR036915 -
Vvi8g490 453 MobiDBLite consensus disorder prediction 129 154 - -
Vvi8g490 453 SMART Cyclin_C_2 329 446 IPR004367 -
Vvi8g490 453 MobiDBLite consensus disorder prediction 16 33 - -
Vvi8g490 453 CDD CYCLIN 327 414 IPR013763 -
Vvi8g490 453 PANTHER CYCLINS 22 450 IPR039361 -
Vvi8g490 453 MobiDBLite consensus disorder prediction 129 157 - -
Vvi8g490 453 SMART cyclin_7 236 320 IPR013763 -
Vvi8g490 453 SMART cyclin_7 333 415 IPR013763 -
Vvi8g490 453 CDD CYCLIN 230 319 IPR013763 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g490 K21777 - vvi:100261859 817.379