Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g516 | ATGCAGCCAGAAAACACGCCAGAGGGTTCAGAGTTCTGCCGGTTTTTGGCCGGTAACGTCCTAAGCGACGTCGGATGGTACGGGTTTCCTGGGAATTGTGACTTTCCGGCTATTCAAAGCTTTTGTAGCTCTTCGTTTTACCCTTCGGAGGTGTCGGGAATTGCGGATGTACCACAGTCCCGAGCTCTGACGGCTTCCATAAATCACAAGGAAGCTGAGAAACGAAGAAGAGAGAGAATTAACTCCCATCTCGATAAGCTTCGGAGTCTTCTTCCTTGCAGTTCCAAGACCGACAAAGCTTCGCTACTGGCAAAGGTGATTCAACGGGTAAAAGAGCTGAAAGAGCAGACCTCAGAAATCACACAACTCGAAACCCTCCCCTCCGAGACAGACGAAATCAACGTAATCCTCTCCGGAGATTACTCCGACGATGGAAAATCCATATTCAAAGCCTCTTTGTGCTGCGAAGACCGCACCGAGCTCTTACCGGAGTTGATCGAGATTCTGAAGTCACTCCGCCTGAAGACTCTCAAAGCAGAAATGGCGTCGCTTGGGGGACGAATCCGGAACATTCTCGTCGTCTCCGGCGACGGAGATCACAGCGACGAGTCTGTCCACTCTTTGCGCGATGCACTGAAAACCTTGGTAGACCATTCCAGTTCCAGCGGTCGGTCTAAACGGCGACGTTTCGGTGTAGATTGCAGAAAAGTTTCTGATTGA | 720 | 50.69 | MQPENTPEGSEFCRFLAGNVLSDVGWYGFPGNCDFPAIQSFCSSSFYPSEVSGIADVPQSRALTASINHKEAEKRRRERINSHLDKLRSLLPCSSKTDKASLLAKVIQRVKELKEQTSEITQLETLPSETDEINVILSGDYSDDGKSIFKASLCCEDRTELLPELIEILKSLRLKTLKAEMASLGGRIRNILVVSGDGDHSDESVHSLRDALKTLVDHSSSSGRSKRRRFGVDCRKVSD* | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 12276213 | 12277848 | + | Vvi8g516 | Vvi8g516 | 790739 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g516 | 239 | PANTHER | TRANSCRIPTION FACTOR BHLH106-RELATED | 10 | 233 | - | - | |
Vvi8g516 | 239 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 10 | 233 | IPR045847 | GO:0003700|GO:0006355 | |
Vvi8g516 | 239 | CDD | bHLH_AtAIG1_like | 59 | 136 | - | - | |
Vvi8g516 | 239 | MobiDBLite | consensus disorder prediction | 220 | 239 | - | - | |
Vvi8g516 | 239 | Gene3D | - | 60 | 125 | IPR036638 | GO:0046983 | |
Vvi8g516 | 239 | Pfam | Helix-loop-helix DNA-binding domain | 68 | 113 | IPR011598 | GO:0046983 | |
Vvi8g516 | 239 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 67 | 123 | IPR036638 | GO:0046983 | |
Vvi8g516 | 239 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 64 | 113 | IPR011598 | GO:0046983 | |
Vvi8g516 | 239 | MobiDBLite | consensus disorder prediction | 219 | 239 | - | - | |
Vvi8g516 | 239 | SMART | finulus | 70 | 119 | IPR011598 | GO:0046983 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15176 | PF00010 | HLH | 1.60E-11 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g516 | - | - | vvi:100241466 | 468.774 |