Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g516 ATGCAGCCAGAAAACACGCCAGAGGGTTCAGAGTTCTGCCGGTTTTTGGCCGGTAACGTCCTAAGCGACGTCGGATGGTACGGGTTTCCTGGGAATTGTGACTTTCCGGCTATTCAAAGCTTTTGTAGCTCTTCGTTTTACCCTTCGGAGGTGTCGGGAATTGCGGATGTACCACAGTCCCGAGCTCTGACGGCTTCCATAAATCACAAGGAAGCTGAGAAACGAAGAAGAGAGAGAATTAACTCCCATCTCGATAAGCTTCGGAGTCTTCTTCCTTGCAGTTCCAAGACCGACAAAGCTTCGCTACTGGCAAAGGTGATTCAACGGGTAAAAGAGCTGAAAGAGCAGACCTCAGAAATCACACAACTCGAAACCCTCCCCTCCGAGACAGACGAAATCAACGTAATCCTCTCCGGAGATTACTCCGACGATGGAAAATCCATATTCAAAGCCTCTTTGTGCTGCGAAGACCGCACCGAGCTCTTACCGGAGTTGATCGAGATTCTGAAGTCACTCCGCCTGAAGACTCTCAAAGCAGAAATGGCGTCGCTTGGGGGACGAATCCGGAACATTCTCGTCGTCTCCGGCGACGGAGATCACAGCGACGAGTCTGTCCACTCTTTGCGCGATGCACTGAAAACCTTGGTAGACCATTCCAGTTCCAGCGGTCGGTCTAAACGGCGACGTTTCGGTGTAGATTGCAGAAAAGTTTCTGATTGA 720 50.69 MQPENTPEGSEFCRFLAGNVLSDVGWYGFPGNCDFPAIQSFCSSSFYPSEVSGIADVPQSRALTASINHKEAEKRRRERINSHLDKLRSLLPCSSKTDKASLLAKVIQRVKELKEQTSEITQLETLPSETDEINVILSGDYSDDGKSIFKASLCCEDRTELLPELIEILKSLRLKTLKAEMASLGGRIRNILVVSGDGDHSDESVHSLRDALKTLVDHSSSSGRSKRRRFGVDCRKVSD* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12276213 12277848 + Vvi8g516 Vvi8g516 790739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g516 239 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 10 233 - -
Vvi8g516 239 PANTHER TRANSCRIPTION FACTOR BHLH30 10 233 IPR045847 GO:0003700|GO:0006355
Vvi8g516 239 CDD bHLH_AtAIG1_like 59 136 - -
Vvi8g516 239 MobiDBLite consensus disorder prediction 220 239 - -
Vvi8g516 239 Gene3D - 60 125 IPR036638 GO:0046983
Vvi8g516 239 Pfam Helix-loop-helix DNA-binding domain 68 113 IPR011598 GO:0046983
Vvi8g516 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 123 IPR036638 GO:0046983
Vvi8g516 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Vvi8g516 239 MobiDBLite consensus disorder prediction 219 239 - -
Vvi8g516 239 SMART finulus 70 119 IPR011598 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15176 PF00010 HLH 1.60E-11 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g516 - - vvi:100241466 468.774