Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g523 ATGGTGACTGGAGGGAGTCATCAAGAAGATGGGGAGAAGAACCCAGCAACCGTTTCTAAGGGAGGAGCTACGAGGTCCTGGGGCACCACGGTTTCGGGCCAGTCAGTGTCTACAAGTGGAAGCGTGGGGTCGCCGTCGAGCCGGAGCGAGGCCGCATTGGCAACACCGGCGAGCGAAAACACTTTTCTTAGATTAAACCATCTTGACATTCACGGTGATGATGCCGGATCTCAAGGGGCCGCTAACAGGAAGAAGAAAAGAGGTCAACGGGCAGTTGGGGGGGATAAGAGTGGTAGGGGACTTCGTCAATTCAGTATGAAAGTTTGTGAGAAAGTGGAAAGCAAGGGAAGGACCACTTATAACGAGGTCGCAGATGAACTGGTAGCTGAATTTGCTGATCCTAGCAATAGTCTTACATCTCCAGATCAGCAACAATATGATGAGAAAAACATAAGGAGGAGAGTATATGATGCCCTGAACGTTCTAATGGCTATGGATATCATATCGAAGGATAAAAAAGAAATACAATGGAAGGGTCTGCCTCGCACTAGTCTAAATGACATTGAAGAATTAAAGACAGACCGCATTGGACTGAGGGGTAGGATTGAGAAGAAAGCTGCCTATTTGCAAGAACTGGAGGAACAATTTGTAGGTCTTCAGAACCTGATACAGCGGAATGAGCAATTATACAGTTCAGGAAATGCTCCCAGCGGGGGTGTGGCCTTGCCTTTTATTCTGGTCCAGACACGCCCTCATGCAACTGTTGAGGTGGAAATATCAGAAGATATGCAGCTGGTGCATTTCGACTTTAACAGCACCCCTTTTGAGCTCCATGATGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAAAGACCACAGGGTGACGATGTAACACATGATTTCCCTGCTGATGGAGAAGGGTCCAGTATGCCTGGCATGTACCAATCCCTAATCCCTCATTCCTCACGGTCAAGCACACTGGGTAGACCTCCAACCTCCCCACCTCTGCCTGGAATATTAAAAGCACGCGTCAAGCATGAGCACTAA 1050 47.81 MVTGGSHQEDGEKNPATVSKGGATRSWGTTVSGQSVSTSGSVGSPSSRSEAALATPASENTFLRLNHLDIHGDDAGSQGAANRKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTDRIGLRGRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQGDDVTHDFPADGEGSSMPGMYQSLIPHSSRSSTLGRPPTSPPLPGILKARVKHEH* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12363238 12399172 - Vvi8g523 Vvi8g523 790746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g523 349 SMART E2F_TDP_2 96 179 IPR003316 GO:0005667|GO:0006355
Vvi8g523 349 Pfam E2F/DP family winged-helix DNA-binding domain 99 179 IPR003316 GO:0005667|GO:0006355
Vvi8g523 349 MobiDBLite consensus disorder prediction 315 330 - -
Vvi8g523 349 MobiDBLite consensus disorder prediction 301 349 - -
Vvi8g523 349 PANTHER TRANSCRIPTION FACTOR DP 16 349 IPR015648 GO:0005667|GO:0051726
Vvi8g523 349 SMART DP_2 186 347 IPR014889 -
Vvi8g523 349 PANTHER TRANSCRIPTION FACTOR DP 16 349 - -
Vvi8g523 349 MobiDBLite consensus disorder prediction 1 55 - -
Vvi8g523 349 Gene3D Transcription factor DP 185 322 IPR038168 -
Vvi8g523 349 CDD DP_DD 184 287 IPR014889 -
Vvi8g523 349 SUPERFAMILY Winged helix DNA-binding domain 99 180 IPR036390 -
Vvi8g523 349 SUPERFAMILY E2F-DP heterodimerization region 185 301 IPR037241 -
Vvi8g523 349 Pfam Transcription factor DP 187 317 IPR014889 -
Vvi8g523 349 MobiDBLite consensus disorder prediction 19 55 - -
Vvi8g523 349 Gene3D - 91 184 IPR036388 -
Vvi8g523 349 Coils Coil 209 229 - -
Vvi8g523 349 MobiDBLite consensus disorder prediction 73 99 - -
Vvi8g523 349 PIRSF Txn_factor_DP 1 349 IPR015648 GO:0005667|GO:0051726
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g523 K04683 TFDP1; transcription factor Dp-1 - vvi:100267128 665.611
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g523 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15177 PF08781 DP 6.90E-41 No_clan Vvi TF