Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g523 ATGGTGACTGGAGGGAGTCATCAAGAAGATGGGGAGAAGAACCCAGCAACCGTTTCTAAGGGAGGAGCTACGAGGTCCTGGGGCACCACGGTTTCGGGCCAGTCAGTGTCTACAAGTGGAAGCGTGGGGTCGCCGTCGAGCCGGAGCGAGGCCGCATTGGCAACACCGGCGAGCGAAAACACTTTTCTTAGATTAAACCATCTTGACATTCACGGTGATGATGCCGGATCTCAAGGGGCCGCTAACAGGAAGAAGAAAAGAGGTCAACGGGCAGTTGGGGGGGATAAGAGTGGTAGGGGACTTCGTCAATTCAGTATGAAAGTTTGTGAGAAAGTGGAAAGCAAGGGAAGGACCACTTATAACGAGGTCGCAGATGAACTGGTAGCTGAATTTGCTGATCCTAGCAATAGTCTTACATCTCCAGATCAGCAACAATATGATGAGAAAAACATAAGGAGGAGAGTATATGATGCCCTGAACGTTCTAATGGCTATGGATATCATATCGAAGGATAAAAAAGAAATACAATGGAAGGGTCTGCCTCGCACTAGTCTAAATGACATTGAAGAATTAAAGACAGACCGCATTGGACTGAGGGGTAGGATTGAGAAGAAAGCTGCCTATTTGCAAGAACTGGAGGAACAATTTGTAGGTCTTCAGAACCTGATACAGCGGAATGAGCAATTATACAGTTCAGGAAATGCTCCCAGCGGGGGTGTGGCCTTGCCTTTTATTCTGGTCCAGACACGCCCTCATGCAACTGTTGAGGTGGAAATATCAGAAGATATGCAGCTGGTGCATTTCGACTTTAACAGCACCCCTTTTGAGCTCCATGATGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAAAGACCACAGGGTGACGATGTAACACATGATTTCCCTGCTGATGGAGAAGGGTCCAGTATGCCTGGCATGTACCAATCCCTAATCCCTCATTCCTCACGGTCAAGCACACTGGGTAGACCTCCAACCTCCCCACCTCTGCCTGGAATATTAAAAGCACGCGTCAAGCATGAGCACTAA 1050 47.81 MVTGGSHQEDGEKNPATVSKGGATRSWGTTVSGQSVSTSGSVGSPSSRSEAALATPASENTFLRLNHLDIHGDDAGSQGAANRKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTDRIGLRGRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQGDDVTHDFPADGEGSSMPGMYQSLIPHSSRSSTLGRPPTSPPLPGILKARVKHEH* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12363238 12399172 - Vvi8g523 Vvi8g523 790746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g523 349 SMART E2F_TDP_2 96 179 IPR003316 GO:0005667|GO:0006355
Vvi8g523 349 Pfam E2F/DP family winged-helix DNA-binding domain 99 179 IPR003316 GO:0005667|GO:0006355
Vvi8g523 349 MobiDBLite consensus disorder prediction 315 330 - -
Vvi8g523 349 MobiDBLite consensus disorder prediction 301 349 - -
Vvi8g523 349 PANTHER TRANSCRIPTION FACTOR DP 16 349 IPR015648 GO:0005667|GO:0051726
Vvi8g523 349 SMART DP_2 186 347 IPR014889 -
Vvi8g523 349 PANTHER TRANSCRIPTION FACTOR DP 16 349 - -
Vvi8g523 349 MobiDBLite consensus disorder prediction 1 55 - -
Vvi8g523 349 Gene3D Transcription factor DP 185 322 IPR038168 -
Vvi8g523 349 CDD DP_DD 184 287 IPR014889 -
Vvi8g523 349 SUPERFAMILY Winged helix DNA-binding domain 99 180 IPR036390 -
Vvi8g523 349 SUPERFAMILY E2F-DP heterodimerization region 185 301 IPR037241 -
Vvi8g523 349 Pfam Transcription factor DP 187 317 IPR014889 -
Vvi8g523 349 MobiDBLite consensus disorder prediction 19 55 - -
Vvi8g523 349 Gene3D - 91 184 IPR036388 -
Vvi8g523 349 Coils Coil 209 229 - -
Vvi8g523 349 MobiDBLite consensus disorder prediction 73 99 - -
Vvi8g523 349 PIRSF Txn_factor_DP 1 349 IPR015648 GO:0005667|GO:0051726
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15177 PF08781 DP 6.90E-41 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g523 K04683 - vvi:100267128 665.611