Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g538 ATGGCTGACATACAAGGCTCCCCAGGAAGCTCCATGCATGGGGTTACTGGCAGAGAGCAAACCTTTGCCTTCTCAGTGGCTTCTCCAGCTATCCCAACTGATACTACTGCGAAATTTGCCTTACCTGTTGATTCTGAGCACAAAGCCAAGGTCTTCAAGGTCTTCTCCTTTGCCAAGCCGCACATGAGAACTTTCCATCTCTCTTGGGTCTCCTTCTTTACCTGCTTCGTCTCCACTTTTGCTGCTGCTCCACTGGTCCCTGTCATCCGAGATAACCTGAATCTCAGAAAGAGTGACATTGGAAATGCTGGCATAGCTTCAGTTTCCGGGAGTATATTTTCCAGGCTTGTCATGGGCGCCGTGTGTGACCTATTAGGCCCCAGATACGGCTGCGCTTTTCTTATGATGCTATCTGCCCCGGCTGTGTTCTGCATGTCCTTCGTTTCATCCGCCGAGGGGTATATAGCTGTCCGGTTTATGATCGGATTCTCTCTTGCCACATTTGTGTCTTGCCAGTACTGGATGAGCACCATGTTTAACAGCCAGATCATTGGGCTGGTTAATGGCACTGCTGCTGGGTGGGGTAACATGGGTGGTGGTGCTACTCAGCTCCTGATGCCGGTGATTTTTGAGATTATCTGTCGAGTTGGGGTGACCCCATTTATGGCATGGCGGGTTGCCTTCTTCATCCCTGGATGCCTGCATGTGATTATGGGGATATTGGTGTTGAGCTTGGGCCAAGATTTGCCTGATGGAAACCTTGGTACCCTGCAGAAGAAAGGTGATGTTTCCAAAGATAAATTCTCTAAGGTTCTCTGGTATGCCATCACAAATTACAGAACATGGATCTTCGTTCTTCTATATGGCTTCTCACTGGGTGTAGAATTAACCGCCGATAATGTGATCGCCGAGTACTTCTACGACAGGTTTGATCTCAAGCTTCACACAGCCGGAACCATAGCGGCCACGTTTGGGATGGCGAACATAGTGGCTCGACCCATGGGCGGGCTCATGTCAGATCTAGCTGCCCGTCCCGCATGTGGCGCCACCTTTGGAATCATTCCATTCATCTCTCGCCGCTCACTCGGCATTATATCCGGCCTGACCGGTGCAGGTGGGAACTTCGGATCCGGGTTGACCCAGTGGCTGTTTTTCACAAGCTCAAAATACTCCACTGCAACTGGAATCTCATTGATGGGGATCATGATCGTGGCGTGCACACTCCCGGTGGCGCTTGTCCATTTTCCGCAGTGGGGAAGCATGTTGCTACCGCCCTCCAAAGATGCAGTGAGGAGCTGTGAAGAGTACTATTATGGATCCGAGTGGAACGAAGCCGAGAAGCAGAAGGGGTTGCACCAAGGAAGCCTCAAGTTTGCCGAGAACAGCAAGTCGGAGAGGGGCCGCCGTGTTGTCTCTGCACCAACCCCACCCACAGCTACACCGCCGGCGAGCGTGTAG 1458 51.85 MADIQGSPGSSMHGVTGREQTFAFSVASPAIPTDTTAKFALPVDSEHKAKVFKVFSFAKPHMRTFHLSWVSFFTCFVSTFAAAPLVPVIRDNLNLRKSDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLMMLSAPAVFCMSFVSSAEGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLLMPVIFEIICRVGVTPFMAWRVAFFIPGCLHVIMGILVLSLGQDLPDGNLGTLQKKGDVSKDKFSKVLWYAITNYRTWIFVLLYGFSLGVELTADNVIAEYFYDRFDLKLHTAGTIAATFGMANIVARPMGGLMSDLAARPACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQWLFFTSSKYSTATGISLMGIMIVACTLPVALVHFPQWGSMLLPPSKDAVRSCEEYYYGSEWNEAEKQKGLHQGSLKFAENSKSERGRRVVSAPTPPTATPPASV* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12658420 12660431 - Vvi8g538 Vvi8g538 790761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g538 485 Pfam Major Facilitator Superfamily 69 408 IPR011701 GO:0022857|GO:0055085
Vvi8g538 485 MobiDBLite consensus disorder prediction 450 467 - -
Vvi8g538 485 Gene3D MFS general substrate transporter like domains 56 253 IPR036259 -
Vvi8g538 485 Gene3D MFS general substrate transporter like domains 264 346 IPR036259 -
Vvi8g538 485 CDD MFS_NRT2_like 65 412 IPR044772 GO:0015112
Vvi8g538 485 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 342 480 - -
Vvi8g538 485 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 344 - -
Vvi8g538 485 MobiDBLite consensus disorder prediction 450 485 - -
Vvi8g538 485 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 344 IPR044772 GO:0015112
Vvi8g538 485 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 342 480 IPR044772 GO:0015112
Vvi8g538 485 SUPERFAMILY MFS general substrate transporter 55 413 IPR036259 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1067 Vvi8g538 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g538 K02575 - vvi:100263699 917.146