Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g553 ATGAACAAGGGTACTGACAGCTATGGTGTCACCACTGGATTTGGTGCGACTTCACATAGGAGAACCAAAGAAGGTGGTGCCCTTCAGAAGGAGCTTATTAGATTCTTGAATGCTGGAATATTTGGGAACGGAACAGACTCATGCCACACGCTGCCTCACTCAGCAACAAGAGCTGCCATGCTAGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATCCTGGAAGCCATAACCAAGCTCCTCAACCACAACATCACTCCAAGCTTGCCTCTGCGTGGCACCATCACTGCCTCTGGAGATTTGGTTCCTCTCTCCTACATTGCCGGTCTTCTCACTGGCAGGCCTAATTCCAAAGCTGTTGGACCTACCGGTGAAGTTGTCAATGCTGAAGAGGCCTTTAAAATGGCTGGAATTGAGTCCGGATTTTTTGAGCTGCAGCCCAAGGAAGGCCTGGCTCTTGTTAATGGCACTGCAGTTGGCTCTGGTTTGGCCTCTATGGTGCTTTTCGAGGCCAATGTTCTGGCGGTGTTGTCTGAACCAAAGCAAGATCGATATGCTCTAAGGACTTCCCCTCAATGGCTTGGCCCACAGATTGAAGTGATCCGAGCATCAACTAAATCCATTGAGAGGGAGATAAACTCAGTGAACGATAACCCCTTGATTGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACCCGCTTGGCAATTGCAGCCATTGGAAAACTTATGTTTGCTCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGGCTGCCATCAAATCTCTCTGGTGGCCGAAACCCAAGTCTGGATTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAACTCCAATTTTTGGCCAATCCTGTCACCAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCCCTGGGCTTAATCTCCTCCAGAAAAACAGCTGAAGCGGTTGATATCTTGAAGCTCATGTCTTCCACATACCTAGTTGCCCTCTGCCAAGCCATTGATTTGAGGCATTTGGAGGAGAATCTGAAGATCACAGTCAAGAACACTATAAGCCACATAGCCAAGAAAACTCTAACCACTGGAGTCAATGGAGAACTCCACCCATCAAGATTCTGCGAGAAGGACTTGCTCAAAGTGGTGGACAGGGAGTATATATTTGCCTACATCGACGACCCCTGCAGTGAAACATATCCACTGATGCAGAAGGGTTGGAGAGTGTTTACTGCAATGTGTGAGGGGAAGATCATAGACCCTCTTCTGGATTGTCTCAGTGGCTGGAACGGTGCTCCTCTCCCAATCTGTTAG 1392 48.49 MNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGIFGNGTDSCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPSLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPTGEVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFEANVLAVLSEPKQDRYALRTSPQWLGPQIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKITVKNTISHIAKKTLTTGVNGELHPSRFCEKDLLKVVDREYIFAYIDDPCSETYPLMQKGWRVFTAMCEGKIIDPLLDCLSGWNGAPLPIC* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12827654 12830532 - Vvi8g553 Vvi8g553 790776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g553 463 Pfam Aromatic amino acid lyase 185 368 IPR001106 -
Vvi8g553 463 Pfam Aromatic amino acid lyase 2 183 IPR001106 -
Vvi8g553 463 SUPERFAMILY L-aspartase-like 2 463 IPR008948 GO:0003824
Vvi8g553 463 PANTHER HISTIDINE AMMONIA-LYASE 182 431 IPR001106 -
Vvi8g553 463 PANTHER HISTIDINE AMMONIA-LYASE 1 184 IPR001106 -
Vvi8g553 463 PANTHER HISTIDINE AMMONIA-LYASE 434 463 IPR001106 -
Vvi8g553 463 Gene3D - 1 162 IPR024083 -
Vvi8g553 463 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 98 114 IPR022313 GO:0016841
Vvi8g553 463 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 182 431 - -
Vvi8g553 463 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 184 - -
Vvi8g553 463 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 434 463 - -
Vvi8g553 463 CDD PAL-HAL 1 365 IPR001106 -
Vvi8g553 463 Gene3D Fumarase/aspartase (Central domain) 177 463 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g244 Vvi8g553 ECH
Vvi8g553 Vvi13g527 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g553 K10775 - sind:105174307 726.857