Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g560 ATGGCTTCTGGTATTTTAAAATCTGTAAGATTTTATGATGATCTTGAAATAGACAAACCCGCACCATCTGAGAACGGCAGTGACTTGGAGCTCATCGACGAGGCCAATGAGAATCAAATTCATGAGTCATGCTTGAAGAAGGCTGGGGAGAATACATTTGTAAAGCCCTTGCATGAGAGAGAACTTTCCAGAGTCTTCTCTGAGGACTATGAGGTGGTGAAGAAGAAGATATTCGATCCTAGAGGACCTGTCAAAAACCGATGGAACAAAATTTTCTTGGTATCATGTTTGATATCTCTTTTTGTGGACCCTCTGTTTTTCTACTTACCAGGGATGAAGAAAGGCATGTGCATGGATATAAGTCAATCCCTTGAAATAGCCCTCACAGTCGTTAGGTCAACTGTGGATACATTTTACATGATTCAGATTTTTGTTCGATTTAGAACAGCTTATGTTGCTCCTTCCTCTCGTGTATTTGGAAGGGGAGAGCTGGTTATAGACCCTTCAAAGATCGCTTCAAGATACCTGCATAAAGACTTCTGGCTTGATCTTGTAGCTGCTGTGCCTTTTCCACAGATGCTGATCTGGGCGGTAATCCCAAATCTATGGACTTTGAGGACAATCAATTTAAGACTGGTTCTTCACCTCATTATCATTTTTCAGTACCTCCTGAGGCTCTATATCATCTTTCCACTCTCATCTCAAATTGTGAAGACCACAGGGGTGGTGACAGAAACAGCATGGGCAGGAGCAGCCTACAATCTGATTCTCTATATGTTGGCAAGCCATGTCGTAGGATCCTGTTGGTACCTATTGTCGACAGAGAGGCAGGAAGAGTGTTGGAGAAAAGTTTGTAGTCTTCAAGAGTCAGAATGCAACTATTGGTTTCTTGATTGCAACAGTTTGCAAGACCCTCATAGAGCTGCTTGGTTCAAATCAAGCAACATCTCAACTCTGTGTGACCCAAGTGGTGACTTCTTTCAGTTTGGAATTTATGCTGATGCTCTCTCTTCTGGAGTTGCATCCTTGAAGTTCTTCAACAAATTCTTCTACTGCCTCTGGTGGGGCATGAGAAACCTGAGCTCTTTAGGACAGAATCTTTCGACAAGCATGTGCGTTGGAGAAATAAATTTTGCAATTATTATTGCAATTCTTGGATTGGTGCTTTTCGCCCTGCTTATTGGGAATATGCAGACATACCTCCAGTCCACAACTGTGAGACTAGAAGAGTGGAGGATCAGGAAGGCTGATACCGAACAATGGATGCATCACAGGCAGCTACCACGTGAATTAAAGCAGAGCGTTCGAAGGTACAATCAGTATAGATGGGTTGCCACCAGCGGAGTTGATGAGGAAGCTATACTTAAAAGTCTCCCATTGGATCTCCGGCGAGACATCAAGCGCCACCTCTGCCTTGACCTAGTTCTAAGAGTGCCACTCTTTGCTCAGATGGATGAGAGGATGCTAGATGTAATATGTGAAAGACTGAAGCCTGGTCTATGTACTCCAGGCACTTGCCTGGTCCGGGAGGGTGACCCTGTCAGTGAGATGCTCTTCATTGTCAGAGGCCACCTAGATTCTTACACTACCAATGGTGGCCGCACCGGGTTCTTCAATTCTGGCCGCATTGGCCCCACTGACTTCTGTGGCGAGGAGCTGCTGACATGGGCACTGGACCCGCGTCCAGGTGTCATTTTACCGTCCTCTACGCGCACAGTTATGGCCCTCACTGAAGTGGAAGCTTTTGCCCTCATTGCTGATGACCTGAAGTTTGTAGCTTCTCAGTTCCGAAGACTGCACAGCAAGCAGCTGAGGCACACTCTCAGGTTTTACTCCCACCAGTGGAGGACATGGGCTGCATGCTTTATACAAGCGGCTTGGTTTCGCTACAAGAGGCGGAGAGAGGCGTCTGAGCTTAAGGCTAAGGAGATCTATGCTGTAAAACTTGCAGCCAGCACTAGGAGGGGTGGATCCGATTTTGACATCCGCCCATTGCAAAAGCCGATGGAGCCTGATTTTACAGTAGACGACAGATAA 2037 46.05 MASGILKSVRFYDDLEIDKPAPSENGSDLELIDEANENQIHESCLKKAGENTFVKPLHERELSRVFSEDYEVVKKKIFDPRGPVKNRWNKIFLVSCLISLFVDPLFFYLPGMKKGMCMDISQSLEIALTVVRSTVDTFYMIQIFVRFRTAYVAPSSRVFGRGELVIDPSKIASRYLHKDFWLDLVAAVPFPQMLIWAVIPNLWTLRTINLRLVLHLIIIFQYLLRLYIIFPLSSQIVKTTGVVTETAWAGAAYNLILYMLASHVVGSCWYLLSTERQEECWRKVCSLQESECNYWFLDCNSLQDPHRAAWFKSSNISTLCDPSGDFFQFGIYADALSSGVASLKFFNKFFYCLWWGMRNLSSLGQNLSTSMCVGEINFAIIIAILGLVLFALLIGNMQTYLQSTTVRLEEWRIRKADTEQWMHHRQLPRELKQSVRRYNQYRWVATSGVDEEAILKSLPLDLRRDIKRHLCLDLVLRVPLFAQMDERMLDVICERLKPGLCTPGTCLVREGDPVSEMLFIVRGHLDSYTTNGGRTGFFNSGRIGPTDFCGEELLTWALDPRPGVILPSSTRTVMALTEVEAFALIADDLKFVASQFRRLHSKQLRHTLRFYSHQWRTWAACFIQAAWFRYKRRREASELKAKEIYAVKLAASTRRGGSDFDIRPLQKPMEPDFTVDDR* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12885618 12889020 + Vvi8g560 Vvi8g560 790783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g560 678 Gene3D Helix hairpin bin 408 471 - -
Vvi8g560 678 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g560 678 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g560 678 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g560 678 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g560 678 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g560 678 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g560 678 ProSiteProfiles cAMP/cGMP binding motif profile. 480 576 IPR000595 -
Vvi8g560 678 CDD CAP_ED 480 611 IPR000595 -
Vvi8g560 678 SUPERFAMILY Voltage-gated potassium channels 79 402 - -
Vvi8g560 678 Gene3D Jelly Rolls 478 598 IPR014710 -
Vvi8g560 678 Gene3D - 91 404 - -
Vvi8g560 678 SUPERFAMILY cAMP-binding domain-like 410 602 IPR018490 -
Vvi8g560 678 SMART cnmp_10 480 611 IPR000595 -
Vvi8g560 678 Pfam Ion transport protein 88 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi8g560 678 MobiDBLite consensus disorder prediction 654 678 - -
Vvi8g560 678 PANTHER PROTEIN CNGC15A 40 675 - -
Vvi8g560 678 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 40 675 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g250 Vvi8g560 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g560 K05391 - vvi:100244894 1368.99