Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g560 | ATGGCTTCTGGTATTTTAAAATCTGTAAGATTTTATGATGATCTTGAAATAGACAAACCCGCACCATCTGAGAACGGCAGTGACTTGGAGCTCATCGACGAGGCCAATGAGAATCAAATTCATGAGTCATGCTTGAAGAAGGCTGGGGAGAATACATTTGTAAAGCCCTTGCATGAGAGAGAACTTTCCAGAGTCTTCTCTGAGGACTATGAGGTGGTGAAGAAGAAGATATTCGATCCTAGAGGACCTGTCAAAAACCGATGGAACAAAATTTTCTTGGTATCATGTTTGATATCTCTTTTTGTGGACCCTCTGTTTTTCTACTTACCAGGGATGAAGAAAGGCATGTGCATGGATATAAGTCAATCCCTTGAAATAGCCCTCACAGTCGTTAGGTCAACTGTGGATACATTTTACATGATTCAGATTTTTGTTCGATTTAGAACAGCTTATGTTGCTCCTTCCTCTCGTGTATTTGGAAGGGGAGAGCTGGTTATAGACCCTTCAAAGATCGCTTCAAGATACCTGCATAAAGACTTCTGGCTTGATCTTGTAGCTGCTGTGCCTTTTCCACAGATGCTGATCTGGGCGGTAATCCCAAATCTATGGACTTTGAGGACAATCAATTTAAGACTGGTTCTTCACCTCATTATCATTTTTCAGTACCTCCTGAGGCTCTATATCATCTTTCCACTCTCATCTCAAATTGTGAAGACCACAGGGGTGGTGACAGAAACAGCATGGGCAGGAGCAGCCTACAATCTGATTCTCTATATGTTGGCAAGCCATGTCGTAGGATCCTGTTGGTACCTATTGTCGACAGAGAGGCAGGAAGAGTGTTGGAGAAAAGTTTGTAGTCTTCAAGAGTCAGAATGCAACTATTGGTTTCTTGATTGCAACAGTTTGCAAGACCCTCATAGAGCTGCTTGGTTCAAATCAAGCAACATCTCAACTCTGTGTGACCCAAGTGGTGACTTCTTTCAGTTTGGAATTTATGCTGATGCTCTCTCTTCTGGAGTTGCATCCTTGAAGTTCTTCAACAAATTCTTCTACTGCCTCTGGTGGGGCATGAGAAACCTGAGCTCTTTAGGACAGAATCTTTCGACAAGCATGTGCGTTGGAGAAATAAATTTTGCAATTATTATTGCAATTCTTGGATTGGTGCTTTTCGCCCTGCTTATTGGGAATATGCAGACATACCTCCAGTCCACAACTGTGAGACTAGAAGAGTGGAGGATCAGGAAGGCTGATACCGAACAATGGATGCATCACAGGCAGCTACCACGTGAATTAAAGCAGAGCGTTCGAAGGTACAATCAGTATAGATGGGTTGCCACCAGCGGAGTTGATGAGGAAGCTATACTTAAAAGTCTCCCATTGGATCTCCGGCGAGACATCAAGCGCCACCTCTGCCTTGACCTAGTTCTAAGAGTGCCACTCTTTGCTCAGATGGATGAGAGGATGCTAGATGTAATATGTGAAAGACTGAAGCCTGGTCTATGTACTCCAGGCACTTGCCTGGTCCGGGAGGGTGACCCTGTCAGTGAGATGCTCTTCATTGTCAGAGGCCACCTAGATTCTTACACTACCAATGGTGGCCGCACCGGGTTCTTCAATTCTGGCCGCATTGGCCCCACTGACTTCTGTGGCGAGGAGCTGCTGACATGGGCACTGGACCCGCGTCCAGGTGTCATTTTACCGTCCTCTACGCGCACAGTTATGGCCCTCACTGAAGTGGAAGCTTTTGCCCTCATTGCTGATGACCTGAAGTTTGTAGCTTCTCAGTTCCGAAGACTGCACAGCAAGCAGCTGAGGCACACTCTCAGGTTTTACTCCCACCAGTGGAGGACATGGGCTGCATGCTTTATACAAGCGGCTTGGTTTCGCTACAAGAGGCGGAGAGAGGCGTCTGAGCTTAAGGCTAAGGAGATCTATGCTGTAAAACTTGCAGCCAGCACTAGGAGGGGTGGATCCGATTTTGACATCCGCCCATTGCAAAAGCCGATGGAGCCTGATTTTACAGTAGACGACAGATAA | 2037 | 46.05 | MASGILKSVRFYDDLEIDKPAPSENGSDLELIDEANENQIHESCLKKAGENTFVKPLHERELSRVFSEDYEVVKKKIFDPRGPVKNRWNKIFLVSCLISLFVDPLFFYLPGMKKGMCMDISQSLEIALTVVRSTVDTFYMIQIFVRFRTAYVAPSSRVFGRGELVIDPSKIASRYLHKDFWLDLVAAVPFPQMLIWAVIPNLWTLRTINLRLVLHLIIIFQYLLRLYIIFPLSSQIVKTTGVVTETAWAGAAYNLILYMLASHVVGSCWYLLSTERQEECWRKVCSLQESECNYWFLDCNSLQDPHRAAWFKSSNISTLCDPSGDFFQFGIYADALSSGVASLKFFNKFFYCLWWGMRNLSSLGQNLSTSMCVGEINFAIIIAILGLVLFALLIGNMQTYLQSTTVRLEEWRIRKADTEQWMHHRQLPRELKQSVRRYNQYRWVATSGVDEEAILKSLPLDLRRDIKRHLCLDLVLRVPLFAQMDERMLDVICERLKPGLCTPGTCLVREGDPVSEMLFIVRGHLDSYTTNGGRTGFFNSGRIGPTDFCGEELLTWALDPRPGVILPSSTRTVMALTEVEAFALIADDLKFVASQFRRLHSKQLRHTLRFYSHQWRTWAACFIQAAWFRYKRRREASELKAKEIYAVKLAASTRRGGSDFDIRPLQKPMEPDFTVDDR* | 679 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 12885618 | 12889020 | + | Vvi8g560 | Vvi8g560 | 790783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g560 | 678 | Gene3D | Helix hairpin bin | 408 | 471 | - | - | |
Vvi8g560 | 678 | PRINTS | EAG/ELK/ERG potassium channel family signature | 143 | 152 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Vvi8g560 | 678 | PRINTS | EAG/ELK/ERG potassium channel family signature | 260 | 270 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Vvi8g560 | 678 | PRINTS | EAG/ELK/ERG potassium channel family signature | 349 | 366 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Vvi8g560 | 678 | PRINTS | EAG/ELK/ERG potassium channel family signature | 375 | 386 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Vvi8g560 | 678 | PRINTS | EAG/ELK/ERG potassium channel family signature | 393 | 402 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Vvi8g560 | 678 | PRINTS | EAG/ELK/ERG potassium channel family signature | 443 | 450 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Vvi8g560 | 678 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 480 | 576 | IPR000595 | - | |
Vvi8g560 | 678 | CDD | CAP_ED | 480 | 611 | IPR000595 | - | |
Vvi8g560 | 678 | SUPERFAMILY | Voltage-gated potassium channels | 79 | 402 | - | - | |
Vvi8g560 | 678 | Gene3D | Jelly Rolls | 478 | 598 | IPR014710 | - | |
Vvi8g560 | 678 | Gene3D | - | 91 | 404 | - | - | |
Vvi8g560 | 678 | SUPERFAMILY | cAMP-binding domain-like | 410 | 602 | IPR018490 | - | |
Vvi8g560 | 678 | SMART | cnmp_10 | 480 | 611 | IPR000595 | - | |
Vvi8g560 | 678 | Pfam | Ion transport protein | 88 | 407 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Vvi8g560 | 678 | MobiDBLite | consensus disorder prediction | 654 | 678 | - | - | |
Vvi8g560 | 678 | PANTHER | PROTEIN CNGC15A | 40 | 675 | - | - | |
Vvi8g560 | 678 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 40 | 675 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g560 | K05391 | - | vvi:100244894 | 1368.99 |