Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g564 ATGATTCCATTTTTGGGTTCAAAAGAGAAATCAAAGGAGGCGGGGAAGTGTTTAAATCCTCAACTCTGGCATGCTTGTGCCGGAGGAATGGTACAAATGCCTCCTGTGAATAGCAAGGTCTTTTACTTTCCCCAAGGCCATGCTGAGCACGCATGTGCTAGTGTGGATTTCAGGAATTACCCAAGGATTCCGGCATACATACCCTGCAGAGTTTCTGCAATGAAATTCATGGCAGATCCTGAGAGTGATGAGGTTTATGCGAAGATTACTCTGGTTCCGTTGAATGGTAGTGAGAGTGATTATGACGATGATGGATATGGAAATGGAACAGAGTCCCAAGAGAAACCTGCCTCTTTTGCAAAGACATTGACACAATCCGATGCCAATAATGGTGGGGGCTTCTCAGTTCCACGATATTGTGCGGAGACTATATTTCCCCGCTTGGATTACACTGCTGATCCTCCCGTACAAAACATCCTTGCAAAGGATGTGCATGGAGAAACGTGGAAATTTAGGCATATTTACAGAGGGACTCCACGGCGTCATCTATTGACAACGGGATGGAGCACTTTTGTTAACCACAAGAAGCTTATAGCTGGGGATTCAATTGTATTTTTGAGAGCAGAAAATGGGGATCTTTGTGTTGGAATTCGAAGAGCAAAGAGGGGAATTGGATGCTCCAATGGGAGTTTTTTTGGCAGGGTAAAAGTGACGGCTGAAGCCGTTATTGAAGCTGTGAGACTTGCTGTCAATGGGCAGCCCTTTGAGGTCATCTATTACCCACGAGCTAGCACGCCAGAATTCTGTGTGAAGTCTTCATTGGTGAAGTCAGCATCGCAGATCCGGTGGTGTTCTGGGATGAGGTTCAAAATGGCTTTTGAAACTGAGGATTCTTCACGTATAAGTTGGTTTATGGGGACTATCTCCTCTGTTCAGGTTGCTGATCCCGTCCGCTGGCCTGATTCACCTTGGAGGCTTCTCCAGGTGACATGGGATGAACCAGATCTGCTTCAAAATGTGAAACGCGTCAGCCCATGGCTGGTAGAATTGGTATCCAATATGCCATCCATCCATCTGACCCATTTTTCACCACCGAGAAAGAAGCTGAGATTCCCACAATACCCAGATTTCCCCCTTGATGCCCAATTTTCAATGCCAACGTTTTCCAGCAACCTTGTAGGGCCAAGTAACCCCTTTGGTTGTTTATCCGACAATATTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCAATATGGTTTATCTTTATCTGATCCCCATCACAATAAATTTCAGTCAGGTCTGTTTCCAGCACCTTTCCCACAGCTCGATCATCCTGCCACACCCCCTAAAGCCTCCAATGATTATAAATCCGATGATAGAAAGACAGGATTTACACTTTTTGAGCACTCATCCTGTGAAGGGTACCAAACATACAAGGTTAATCACCGTGAAACCGAGCCCAACTTGGAGACTGGTCACTGTAAGGTTTTCATGGAATCTGAGGATGTGGGTCGCACTCTTGATCTTTCATTACTTACATCTTATGATGAATTATGCGGCAAGCTGGCAAAAATGTTTACTATAGAAGATTCTGAGATGCGGAACCATGTGCTCTATAGGGATGCAACTGGTGCAGTCAAACATATCGGCGATGAACCATTTAGTGACTTCACAAAAACAGCGAAAAGGTTGACAATTTTAATGGATTCAAGCAGCGACAATGTAGGAGTGTATAGAAAATAA 1743 45.04 MIPFLGSKEKSKEAGKCLNPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHACASVDFRNYPRIPAYIPCRVSAMKFMADPESDEVYAKITLVPLNGSESDYDDDGYGNGTESQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKRGIGCSNGSFFGRVKVTAEAVIEAVRLAVNGQPFEVIYYPRASTPEFCVKSSLVKSASQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVADPVRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPSIHLTHFSPPRKKLRFPQYPDFPLDAQFSMPTFSSNLVGPSNPFGCLSDNIPAGMQGARHAQYGLSLSDPHHNKFQSGLFPAPFPQLDHPATPPKASNDYKSDDRKTGFTLFEHSSCEGYQTYKVNHRETEPNLETGHCKVFMESEDVGRTLDLSLLTSYDELCGKLAKMFTIEDSEMRNHVLYRDATGAVKHIGDEPFSDFTKTAKRLTILMDSSSDNVGVYRK* 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12924235 12928912 + Vvi8g564 Vvi8g564 790787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g564 580 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Vvi8g564 580 PANTHER AUXIN RESPONSE FACTOR 6 226 - -
Vvi8g564 580 PANTHER AUXIN RESPONSE FACTOR 227 568 - -
Vvi8g564 580 Gene3D - 489 575 - -
Vvi8g564 580 ProSiteProfiles PB1 domain profile. 491 574 IPR000270 GO:0005515
Vvi8g564 580 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 226 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi8g564 580 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 227 568 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi8g564 580 SUPERFAMILY DNA-binding pseudobarrel domain 112 224 IPR015300 -
Vvi8g564 580 SMART B3_2 119 221 IPR003340 GO:0003677
Vvi8g564 580 MobiDBLite consensus disorder prediction 99 118 - -
Vvi8g564 580 Gene3D - 117 221 IPR015300 -
Vvi8g564 580 Pfam Auxin response factor 245 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi8g564 580 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Vvi8g564 580 Gene3D - 282 356 - -
Vvi8g564 580 CDD B3_DNA 118 219 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g258 Vvi8g564 ECH
Vvi8g564 Vvi13g519 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15179 PF02362 B3 6.80E-21 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g564 - - vvi:100251645 1133.63