Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g570 ATGATCTTCATCCTTGTTTACTGCACCGCCGGCATCTCTGGAGGGCATATTAATCCTGCAGTGACGTTCGGGCTATTCCTGGCTAGAAAGGTGTCGCTGGTCCGAGCCCTCGCCTCTGGATACAGTATAGGAACGGGGTTGGCTGCTGAGATTATTGGCACCTTCGTTCTTGTCTACACCGTCTTCTCTGCTACTGATCCCAAAAGAAATGCAAGAGATTCCCATGTGCCTGTTTTGGCACCACTCCCCATTGGATTTGCTGTGTTCATGGTTCACTTAGCCACGATCCCCATCACCGGTACCGGAATCAACCCGGCTCGAAGTCTCGGAGCTGCTGTCATCTACAACCAACCCAAAGCCTGGAGTGACCATTGGGTATTTTGGGCTGGACCCTTCATTGGTGCAGCCATTGCAGCATTCTATCACCAGTTCATATTGAGAGCTGGAGCTGTTAAAGCTCTAGGGTCTTTCAAGAGCAGTTCCCACATGTAA 492 50.81 MIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALASGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQPKAWSDHWVFWAGPFIGAAIAAFYHQFILRAGAVKALGSFKSSSHM* 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12986503 12988076 + Vvi8g570 Vvi8g570 790793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g570 163 Gene3D Glycerol uptake facilitator protein. 1 36 IPR023271 -
Vvi8g570 163 Gene3D Glycerol uptake facilitator protein. 37 163 IPR023271 -
Vvi8g570 163 PANTHER AQUAPORIN PIP2-1-RELATED 36 160 - -
Vvi8g570 163 PANTHER AQUAPORIN PIP2-1-RELATED 1 37 - -
Vvi8g570 163 Pfam Major intrinsic protein 37 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g570 163 PRINTS Major intrinsic protein family signature 49 67 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g570 163 PRINTS Major intrinsic protein family signature 85 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g570 163 PRINTS Major intrinsic protein family signature 125 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g570 163 SUPERFAMILY Aquaporin-like 2 147 IPR023271 -
Vvi8g570 163 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 36 160 IPR034294 -
Vvi8g570 163 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 37 IPR034294 -
Vvi8g570 163 ProSitePatterns MIP family signature. 16 24 IPR022357 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g267 Vvi8g570 ECH
Vvi8g570 Vvi13g510 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g570 K09872 - vvi:100233094 298.516