Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g574 ATGGAAGTTTATGGAAATCTAACAGAATTAAATATTGGAATAGAACAGTCAATAAGCAGGGGTGAACTTGGTCAAATCACCTCGATTGAGGGTACTTTCAATATGAAGTTCTCTTTTTCTTTCTCAAATTGCTTCTCCCCATCATCACCGCCTGAAGTTGATCGAAGCAGCAGCAGCGGGCAAGAAACAGGAGGAAACACTAGTGAAAAATTTCAAGTCTTCTCTTATAAAGAATTGAAAATCGCCACAGATAGCTTCCACCCATCAAACAAGATTGGTGAAGGAGGCTTTGGTTCTGTCTACAAGGGCCAGCTAAGAGATGGGACCACAGTGGCTGTAAAGGTGCTTTCAGTTGAAATTGAATCGATGCGAGGGGAGAGGGAGTTTGTCTCTGAGTTATCCGCACTGACAGATATCAAGCATGAAAATCTGGTTACCCTTCAAGGATGTTGCGTCGAGGGAGCTAGCAGATTTTTGGTTTATGATTATATGGAGAACAATAGCCTTGCACAAACCTTACTTGGTGCAAAGCAGAACAGGATGGAATTTGGTTGGGAAGCAAGGCGGGGCATTTCACTGGGAGTAGGTCGGGGACTCGCCTATCTCCATGAGGAAGTTCAACCCCATATCATACATCGGGATATTAAGGCTGCCAATATACTTCTAGATCAGAATCTCGCCCCCAAAATCTCAGATTTTGGCTTATCAAAGCTGTTTGTAGATAGCAGATCTCATATTAGTACTCGTGTTGCCGGGACATTAGGCTATCTTGCTCCAGAATATGCTCTTAGCGGGCGTTTGACAAGAAAATCAGATGTTTACAGTTTTGGAGTGCTCCTCCTTGAAATTATCAGTGGCCACTCAGTCGTGGAATATGACTTAGAACACGGCGAACATTATTTGGTCGAAAAGGCATGGGAAATGTACACGGATAACAAACTTCTGCAGCTAGTCGACCCCACGCTAAAGGACTTCCCTGAAGAAGAAGCTATTCAATTCTTAAAGGTGGGCCTACTTTGTGTGCAAGAGATCAGCGGCCTTCGCCCCCGAATGTCAGCAGCCGTGAAGATGTTGACTAATGAGATCAATGTTAATGATGTTCATATATCACAACCGGGACTTCTTTCAGATCTCACCGCCGTTAAAATAGGCCACAGGCGCTCTTTTCCAACCATTTCCTCCAAGGCCTCCACCAGTACCAGCACGCAGAGCGCCAACACAAACCCATCCTTGACTGGGAGCTCTGGTCCCCTTAACATGGATGCTGTATTATTTGATGTTAAATCTGAGTCTCATAGATAG 1302 44.55 MEVYGNLTELNIGIEQSISRGELGQITSIEGTFNMKFSFSFSNCFSPSSPPEVDRSSSSGQETGGNTSEKFQVFSYKELKIATDSFHPSNKIGEGGFGSVYKGQLRDGTTVAVKVLSVEIESMRGEREFVSELSALTDIKHENLVTLQGCCVEGASRFLVYDYMENNSLAQTLLGAKQNRMEFGWEARRGISLGVGRGLAYLHEEVQPHIIHRDIKAANILLDQNLAPKISDFGLSKLFVDSRSHISTRVAGTLGYLAPEYALSGRLTRKSDVYSFGVLLLEIISGHSVVEYDLEHGEHYLVEKAWEMYTDNKLLQLVDPTLKDFPEEEAIQFLKVGLLCVQEISGLRPRMSAAVKMLTNEINVNDVHISQPGLLSDLTAVKIGHRRSFPTISSKASTSTSTQSANTNPSLTGSSGPLNMDAVLFDVKSESHR* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13018069 13020594 - Vvi8g574 Vvi8g574 790797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g574 433 Pfam Protein kinase domain 87 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g574 433 ProSiteProfiles Protein kinase domain profile. 86 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g574 433 SMART serkin_6 86 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g574 433 CDD STKc_IRAK 92 360 - -
Vvi8g574 433 Gene3D Transferase(Phosphotransferase) domain 1 164 371 - -
Vvi8g574 433 PANTHER SERINE/THREONINE-PROTEIN KINASE ISOFORM X1-RELATED 36 388 - -
Vvi8g574 433 Gene3D Phosphorylase Kinase; domain 1 52 163 - -
Vvi8g574 433 SUPERFAMILY Protein kinase-like (PK-like) 66 358 IPR011009 -
Vvi8g574 433 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 388 - -
Vvi8g574 433 MobiDBLite consensus disorder prediction 392 417 - -
Vvi8g574 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vvi8g574 433 ProSitePatterns Protein kinases ATP-binding region signature. 92 114 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g574 Vvi13g499 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76818 PF00069 Pkinase 1.20E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g574 - - vvi:100255008 755.747