Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g576 ATGAGGTATGAATTGCAGGAGATTTATGGGATTGGGAACTCTGTTGATGGTGATTTTGACAGCAATGATCCAGGAAAAGAATGTGTTATCTGCTTGTCGGAACCTCGGGACACAACTGTCCTTCCCTGTCGACATATGTGTATGTGCAGTGGGTGTGCTAAAGTTTTGAGGTTCCAAACGGACCGGTGCCCTATTTGCCGACAACTAGTCGAGAGACTTCTGGAGATAAAGGTCAGCAATGGGTCTGACGACTGA 255 46.67 MRYELQEIYGIGNSVDGDFDSNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTDRCPICRQLVERLLEIKVSNGSDD* 85
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 13029244 13030391 + Vvi8g576 Vvi8g576 790799
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g576 84 Pfam Zinc finger, C3HC4 type (RING finger) 26 72 - -
Vvi8g576 84 SMART ring_2 28 66 IPR001841 -
Vvi8g576 84 ProSiteProfiles Zinc finger RING-type profile. 28 67 IPR001841 -
Vvi8g576 84 PANTHER MAHOGUNIN 1 84 IPR045194 GO:0061630
Vvi8g576 84 SUPERFAMILY RING/U-box 21 73 - -
Vvi8g576 84 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 77 IPR013083 -
Vvi8g576 84 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 84 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi6g278 Vvi8g576 ECH
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g576 - - vvi:100260106 182.185