Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g576 | ATGAGGTATGAATTGCAGGAGATTTATGGGATTGGGAACTCTGTTGATGGTGATTTTGACAGCAATGATCCAGGAAAAGAATGTGTTATCTGCTTGTCGGAACCTCGGGACACAACTGTCCTTCCCTGTCGACATATGTGTATGTGCAGTGGGTGTGCTAAAGTTTTGAGGTTCCAAACGGACCGGTGCCCTATTTGCCGACAACTAGTCGAGAGACTTCTGGAGATAAAGGTCAGCAATGGGTCTGACGACTGA | 255 | 46.67 | MRYELQEIYGIGNSVDGDFDSNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTDRCPICRQLVERLLEIKVSNGSDD* | 85 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 13029244 | 13030391 | + | Vvi8g576 | Vvi8g576 | 790799 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g576 | 84 | Pfam | Zinc finger, C3HC4 type (RING finger) | 26 | 72 | - | - | |
Vvi8g576 | 84 | SMART | ring_2 | 28 | 66 | IPR001841 | - | |
Vvi8g576 | 84 | ProSiteProfiles | Zinc finger RING-type profile. | 28 | 67 | IPR001841 | - | |
Vvi8g576 | 84 | PANTHER | MAHOGUNIN | 1 | 84 | IPR045194 | GO:0061630 | |
Vvi8g576 | 84 | SUPERFAMILY | RING/U-box | 21 | 73 | - | - | |
Vvi8g576 | 84 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 77 | IPR013083 | - | |
Vvi8g576 | 84 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 1 | 84 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g576 | - | - | vvi:100260106 | 182.185 |