Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g588 ATGCAAATGATGTCTGGCGATATGTTCTCCATCCCCTCTTCCATCAGAACCTTTGCTCAAGACCCAGATGCAAACCCTAATAATCTTAAACCTCCGCCCAAGAAGAAGAGAAATCTACCTGGAACCCCAGATCCAGATGCGGAGGTTATTGCTCTTTCACCAAAGACTCTCATGGCCACCAATCGATTCATATGTGAAATCTGCAATAAAGGGTTTCAGAGAGACCAGAACCTGCAACTGCACCGAAGAGGACACAATCTTCCATGGAAGCTCAAGCAAAGGTCGAACAAAGAGGTTCGAAAGAAGGTTTACATCTGCCCCGAGAAGACCTGCGTTCACCACGACCCCTCCAGAGCCCTCGGCGACCTTACTGGGATAAAAAAACATTTCAGTAGAAAACATGGCGAGAAGAAGTGGAAGTGCGAGAAGTGTTCTAAGAAATACGCAGTTCAATCTGACTGGAAAGCTCACTCGAAAACTTGCGGAACCAGGGAGTACAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGATAGCTTCATTACGCATAGGGCTTTCTGTGATGCCTTGGCTGAAGAGCGTGCTAGAATCACTTCTGTTGCAGCCACCAATCTAAATTTCAGAAACGATTCCATGAATGAGACGGTGATTAATCCTCAACCCGGTTTGTTGAATGGATTTTCCGGACGGGGAGGTCCAGATGCGGCCGGAATTTCTCAATTTTGCCCAGGTTTTGGACCAGATTTAACAGGTTTGCCTGAGATGGTGCAAGTGGCAGCATCAAATCTGTTTGGCTCCTCTTCTGTAGGTAATTTCGGAAGCTGCAACGAGTCCCCTTGGCTGGACAAGAGTTCTGCAACGTCAAATGGTGCAAATCTCTCACTGGCATCTCTCCCACATGCTTTAAAGGAAGAAGAAGGGAACAAAGGAAGCATGGTGGAAACCCTAACTTCTCTCTATTCCGGTAACCACAGCCAGCAGTCAAGTCCCGCAGCTCCCATGTCAGCCACTGCTCTCTTGCAGAAAGCTGCTCAGATGGGTTCCACAAGAAGCAACCCATCCTTCTTCGGTAACAGCTTTGGAGTGATGAACTCATCTGGTTCCCATTCAACCACCCTCAATACTCTCACTCACAATAGAAACGAGCTGCACCAAGTTTTCGGGACGGGTAAACAACATGAGAATTTAATGGCGACTGCCTCATTGAGTGAAGGCACAAGTGGAAAACAAACCGAACCAGTTCCATTGAAGCTTCATCTAGGCTCAAACAGTGTGGAAAATAGCCTCACCAGGGATTTCCTGGGGATGGGAGGAGGTGAATCAGGTCGTCCATTCTTGCCCCAAGAGCTAGCCAAATTTGCTTCAATGGGCTCAGCCATGGGGTTGAGCCATTTCACCAGCAACCATTGA 1410 47.66 MQMMSGDMFSIPSSIRTFAQDPDANPNNLKPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEERARITSVAATNLNFRNDSMNETVINPQPGLLNGFSGRGGPDAAGISQFCPGFGPDLTGLPEMVQVAASNLFGSSSVGNFGSCNESPWLDKSSATSNGANLSLASLPHALKEEEGNKGSMVETLTSLYSGNHSQQSSPAAPMSATALLQKAAQMGSTRSNPSFFGNSFGVMNSSGSHSTTLNTLTHNRNELHQVFGTGKQHENLMATASLSEGTSGKQTEPVPLKLHLGSNSVENSLTRDFLGMGGGESGRPFLPQELAKFASMGSAMGLSHFTSNH* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13208772 13211555 - Vvi8g588 Vvi8g588 790811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g588 469 MobiDBLite consensus disorder prediction 1 24 - -
Vvi8g588 469 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Vvi8g588 469 MobiDBLite consensus disorder prediction 1 47 - -
Vvi8g588 469 Gene3D Classic Zinc Finger 117 196 - -
Vvi8g588 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 458 - -
Vvi8g588 469 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Vvi8g588 469 SMART c2h2final6 104 134 IPR013087 -
Vvi8g588 469 SMART c2h2final6 139 159 IPR013087 -
Vvi8g588 469 SMART c2h2final6 63 85 IPR013087 -
Vvi8g588 469 PANTHER ZINC FINGER PROTEIN JACKDAW 7 458 IPR033243 GO:0003700
Vvi8g588 469 Gene3D Classic Zinc Finger 41 115 - -
Vvi8g588 469 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Vvi8g588 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g287 Vvi8g588 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15180 PF12171 zf-C2H2_jaz 6.80E-05 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g588 K25870 - vvi:100243175 910.983