Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g590 ATGACCGTGATCGACATTCTCACCAGAGTCGACGCGATCTGCAAGAAATACGACAAGTACGACATCGACAAGCAGAAGGATCTCAATGTCTCCGGCGATGATGCCTTCGCTCGTCTTTACGCCGTCGTTGAAGCCGACATCGAGGCCGCTCTTCAGAAAGCAGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTGAACGCCGAGATTCGTCGGACCAAGGCTCGATTGCTGGAGGAGGTCCCTAAGTTGCAGAGACTGGCTATAAAGAAGGTTAAAGGGCTTTCAACAGAAGAACTTGCTGCTCGTAATGATTTGGTCCTTGCATTGCCGGATAGGATCCAAGCAATACCAGATGGGGCTGCAACTGCACCCAAACAAACTGGAGGTTGGGCAGCTTCAGCTTCTCGTACAGAAATCAAATTTGATTCAGATGGACGATTTGACAGTGAATACTTCCAACAAACTGAAGAGTCTAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAACCAAGACCAAGGTTTGGATGTGATAGCAGAAGGTTTGGACACATTGAAAAACATGGCCCATGATATGAATGAGGAATTGGATCGGCAAGTTCCTTTGATGGATGAGATCGACACCAAGGTGGACAAAGCAACAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAGCTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAATGTATTGAAGAAGTGA 798 45.11 MTVIDILTRVDAICKKYDKYDIDKQKDLNVSGDDAFARLYAVVEADIEAALQKADTASNEKNRASAVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELAARNDLVLALPDRIQAIPDGAATAPKQTGGWAASASRTEIKFDSDGRFDSEYFQQTEESSQFRQEYEMRKMNQDQGLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKATADLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13239568 13251238 - Vvi8g590 Vvi8g590 790813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g590 265 CDD SNARE_Qc 176 230 - -
Vvi8g590 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi8g590 265 Gene3D - 170 231 - -
Vvi8g590 265 Coils Coil 40 67 - -
Vvi8g590 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Vvi8g590 265 PANTHER SYNTAXIN-73 1 261 - -
Vvi8g590 265 SMART tSNARE_6 165 232 IPR000727 -
Vvi8g590 265 Coils Coil 215 235 - -
Vvi8g590 265 Pfam SNARE domain 207 256 IPR000727 -
Vvi8g590 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vvi8g590 265 SUPERFAMILY SNARE fusion complex 165 230 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g289 Vvi8g590 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g590 K08506 - vvi:100258582 496.893