Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g604 ATGATCACTGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCATGCTTTGCTTGCCTTCACCCTTGGTGTCAGGCAAATGATCTGCTGTTGCAATAAGATGGATGCGACAACACCGAAGTACTCCAAGTCCAGGTATGATGAAATTGTGAAGGAACGGTCAACAAACCTTGACTGGTACAAGGGCCCTACCCTCCTTGAGGCTCTTGACATGATTCACGAGCCCAAGAGGCCCTCGGACAAGCCCCTTCTCAAGTCAGTTGAAATGCACCATGAGTCTTTGGTAGAGGGTCTGCCTGGTGACAATGTTGGTTTCAATGTGAAGAATGTTGCTGTCATTATCATGAACCATCCTGGCCAAATTGGAAATGGTTATGCCCCAGTCCTTGACTGTCACACCTCCCACATTGCGGTGAAGTTTGCTGAGATTACGACCAAGATTGACAGGCGGTCTGGCAAGGAGCTTGAGAAGGAGCCCAACCCATGGTTGTGGAAACTTTCTCCGAGTACCCTCCACTTGGCCGTTTTGCTGTTAGGGACATGCGTCAAACTGTTGCTGTCGGTGTTATCAAGAGTGTTGAGAAGAAGGATCCAAGTGGTGCCAAGGTTACCAAGTCCGCTGCCAAGAAGAAATGAAAGGTTTGTTTTAGAAAACCAATGCTAA 663 48.42 MITAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKERSTNLDWYKGPTLLEALDMIHEPKRPSDKPLLKSVEMHHESLVEGLPGDNVGFNVKNVAVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEITTKIDRRSGKELEKEPNPWLWKLSPSTLHLAVLLLGTCVKLLLSVLSRVLRRRIQVVPRLPSPLPRRNERFVLENQC* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13420293 13423363 + Vvi8g604 Vvi8g604 790827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g604 220 Gene3D - 54 74 IPR027417 -
Vvi8g604 220 Gene3D - 3 53 IPR027417 -
Vvi8g604 220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 83 IPR027417 -
Vvi8g604 220 Pfam Elongation factor Tu C-terminal domain 111 159 IPR004160 -
Vvi8g604 220 Pfam Elongation factor Tu GTP binding domain 8 65 IPR000795 GO:0003924|GO:0005525
Vvi8g604 220 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 111 160 IPR009001 -
Vvi8g604 220 PANTHER TRANSLATION FACTOR 52 83 - -
Vvi8g604 220 PANTHER TRANSLATION FACTOR 112 160 - -
Vvi8g604 220 PANTHER TRANSLATION FACTOR 84 112 - -
Vvi8g604 220 PANTHER TRANSLATION FACTOR 3 54 - -
Vvi8g604 220 Gene3D Translation factors 108 203 - -
Vvi8g604 220 Gene3D Translation factors 75 87 - -
Vvi8g604 220 PANTHER ELONGATION FACTOR 1-ALPHA 52 83 - -
Vvi8g604 220 PANTHER ELONGATION FACTOR 1-ALPHA 112 160 - -
Vvi8g604 220 PANTHER ELONGATION FACTOR 1-ALPHA 84 112 - -
Vvi8g604 220 PANTHER ELONGATION FACTOR 1-ALPHA 3 54 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g604 Vvi13g476 ECH
Vvi6g303 Vvi8g604 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g604 K03231 - vvi:100244821 271.552