Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g606 ATGGGGAGGAAAGGGAACTGGCTTTCTTCCGTAAAGAAGGCTCTCAGCCCAGAACCCAAGGAGAAGAAGGACCAGAGAGCAGATAAATCCAAGAAGAAATGGTTTGGGAAGCACAAATATCCAGATCCTAATCCTTCCTCTTTAGAAACTGTTCCAGGGCCTTCTCTTGCTCCTCCTGAAGAGGTGAAAACAATCGAACCTGATAATGAACATCACAAGCATGTTTACTCTGTTGCAGCCACAACTACCATGGCTTCCCTTGATGTTCCTGAGACTGATGTGGAGGTTGTTGAAATCACCACTCTGACTCAGTCAACGGGAAAAGCAAAAGAGGAAGCAGCAGCAATCAAGATTCAAACAGCATTCCGAGGTTATTTGGCAAGGAGGGCATTACGGGCTTTAAGAGGGCTGGTCAGGTTGCAATCACTGATACAAGGGACCGCTGTTAAACGCCAAGCTGCAAACACTCTACGGTGCATGCAAACTCTTGCTCGTGTGCAGTCTCAGATCTGTTATAGGAGGATCAGGATGTCTGAGGAGAATCAGGCTCTCCAGAGACAACTCCTACAGAAACAGGCAAAAGAGTTTGAGCAGTTGAAGATGGGGGAGGAATGGGATGACAGCCTACAATCAAAAGAACAAATTGAAGCAGGCCTATTAAACAAGCAAGGGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGCAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCAAGCAACCCCCATTGGGGTTGGAGCTGGTTGGAACGATGGATGGCGGCCCGGCCATGGGAGAGCCGCAGCACAACAGATAAAGAACTCAATAACGACCAATTATCCATAAAAACCAAAAACCATACCATCCTCCTGCCCGCCAAGCATGGTCAGCATTCAGTCGGAGCGGTTTCGGAGGCATAG 954 47.69 MGRKGNWLSSVKKALSPEPKEKKDQRADKSKKKWFGKHKYPDPNPSSLETVPGPSLAPPEEVKTIEPDNEHHKHVYSVAATTTMASLDVPETDVEVVEITTLTQSTGKAKEEAAAIKIQTAFRGYLARRALRALRGLVRLQSLIQGTAVKRQAANTLRCMQTLARVQSQICYRRIRMSEENQALQRQLLQKQAKEFEQLKMGEEWDDSLQSKEQIEAGLLNKQGAAMRRERALAYAFSHQQAWKNSSKSTNLLFMDPSNPHWGWSWLERWMAARPWESRSTTDKELNNDQLSIKTKNHTILLPAKHGQHSVGAVSEA* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13435572 13441098 + Vvi8g606 Vvi8g606 790829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g606 317 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 300 - -
Vvi8g606 317 MobiDBLite consensus disorder prediction 15 39 - -
Vvi8g606 317 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Vvi8g606 317 Coils Coil 174 194 - -
Vvi8g606 317 SMART iq_5 110 132 IPR000048 GO:0005515
Vvi8g606 317 PANTHER IQ-DOMAIN 5-RELATED 1 300 - -
Vvi8g606 317 Pfam IQ calmodulin-binding motif 113 132 IPR000048 GO:0005515
Vvi8g606 317 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g606 - - - vvi:100255106 548.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi8g606 Vvi13g474 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g606 . . . . Bpe04g01589 . . Bma10g00020 Cmo06g00353 . . Cma07g00937 Car03g01126 Car07g00918 . Cpe10g00203 . Bhi03g01672 . . . Hepe04g0914 . . Cla04g00869 Cam04g0841 Cec04g1024 Cco04g1083 Clacu04g0929 Cmu04g0918 Cre01g0429 . . Cone13ag1287 Cone19ag1272 Lsi01g01363 Csa04g01422 Chy08g00816 Cme04g02549 Blo07g01409 Blo09g00550 Bda03g01731 Bda05g01241 . . . . Sed04g1336 . Cmo07g00981 Cma06g00359 . Car06g00308 . . Cpe19g00400 Bhi11g02125 Tan08g1905 Cmetu04g2215 . Hepe05g0240 . . Cla10g01948 Cam10g2014 Cec10g2056 Cco10g2042 Clacu10g2021 Cmu10g2771 Cre10g2162 Lsi03g02046 Csa03g03255 Chy04g02086 Cme08g02328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g474 ECH 107 328 IQD Protein Family AT3G09710 56.4 1.8e-59 227.3
Vvi8g606 ECH 1 289 IQD Protein Family AT5G03040 56.6 1.1e-72 271.2
Vvi13g474 ECH 1 299 IQD Protein Family AT5G03040 53.0 2.1e-68 256.9
Vvi13g474 ECH 1 309 IQD Protein Family AT3G52290 59.5 1.5e-79 293.9
Vvi8g606 ECH 6 289 IQD Protein Family AT3G52290 56.4 3.7e-75 279.3
Vvi13g474 ECH 96 310 IQD Protein Family AT2G26410 54.6 1.6e-48 191.0
Vvi6g808 . 1 418 IQD Protein Family AT3G22190 60.9 8.6e-109 391.0
Vvi4g85 . 1 390 IQD Protein Family AT2G26180 60.9 5.5e-116 414.8
Vvi19g140 ECH 1 243 IQD Protein Family AT3G15050 53.5 7.0e-61 231.1
Vvi10g183 ECH 67 264 IQD Protein Family AT3G15050 56.7 3.4e-55 212.2
Vvi15g624 ECH 1 558 IQD Protein Family AT4G00820 55.5 4.2e-129 458.8
Vvi15g624 ECH 1 558 IQD Protein Family AT1G01110 51.0 1.2e-120 430.6
Vvi9g268 ECH 1 373 IQD Protein Family AT3G16490 57.3 5.0e-79 292.0
Vvi11g260 ECH 1 395 IQD Protein Family AT3G16490 51.0 2.1e-69 260.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006173 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38