Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g640 ATGTCTTGTCTGCCTTACGCTCATGTTGATTCCAACTTAAGAGCTCTGGCTGGGCAGGCCGAGGGTTTCGGCCGTCTTGCCATTGGTGGTCTTCACGGACCTCTTTATCATGTCACCACTCTAGCAGATGATGGGCCAGGATCACTTCGTGATGGATGTCGTAAGAAAGAACCACTTTGGATTGTCTTTGAAGTTTCAGGCATCATTCATCTCTCATCTTACCTGAATGTATCATCTTATAAAACTATTGATGGGCGGGGCCAGAGGATAAAACTCACAGGAAAGGGTTTAAGGCTGAAGGAATGTGAGCATGTAATTATATGCAATCTAGAGTTTGAAGGTGGTAGAGGACCTGATGTTGATGGCATTCAAATAAAACCTAATTCAAAGCACATATGGATTGATCGTTGCAGCCTCCGTGATTTTGATGATGGACTGATTGATATCACTCGTGCAAGCACGGATATTACCATTTCCAGATGTCACTTCTCACAGCATGACAAGACGATGCTCATTGGAGCAGACCCATCTCACACTGGTGATAGATGTATTCGGGTGACCATTCATCATTGCTTTTTCGATGGCACTCGACAGCGGCACCCTCGTGTTAGATATGGGAAAGTACATCTATATAATAATTACACCAGAAACTGGGGCATTTATGCTGTTTGTGCCAGTGTAGAATCACAGATATACTCCCAATGCAATATATACGAAGCAGGACATAAGAAGGTGGCATTTAAATATCTTACAGAGAAGGCAGCTGACAAAGAAGAGGAAAGAACTGGCTGTCTAAGGTCAGAAGGGGACTTGTTCATAAACGGAACTCAAGCAGGCTTAATGACTGTGGCCAGTGAAATGTTTCACCCTCGGGAATTCTATCCCACATGGACAGTTGAGGCTCCTTCTGATGCTCTTAAGCAGGTTCTCCATCATTGTACAGGATGGCAGTGTGTTCCCCGGCCAGCAGATGAAGCAGCAATTGCTTAG 990 44.65 MSCLPYAHVDSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGIIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKYLTEKAADKEEERTGCLRSEGDLFINGTQAGLMTVASEMFHPREFYPTWTVEAPSDALKQVLHHCTGWQCVPRPADEAAIA* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13772720 13779581 - Vvi8g640 Vvi8g640 790863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g640 329 Gene3D - 5 313 IPR012334 -
Vvi8g640 329 SUPERFAMILY Pectin lyase-like 17 318 IPR011050 -
Vvi8g640 329 SMART amb_all 31 244 IPR002022 -
Vvi8g640 329 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Vvi8g640 329 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Vvi8g640 329 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Vvi8g640 329 PANTHER PECTATE LYASE 18-RELATED 2 322 IPR045032 GO:0030570
Vvi8g640 329 PANTHER PECTATE LYASE 2 322 - -
Vvi8g640 329 Pfam Pectate lyase 75 237 IPR002022 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g640 K01728 - vvi:100255011 694.501