Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g649 ATGGGAAAGGGTGGGGAGGACTATGGGAAGCGGGAGGTTTCGAGCTCTAAGGTGAGTGGCCCGGAAGTGTTTCCGGCGTGGGGGAGGGAGGTTCAGGAATGTGAGAAGCATTATGGGGTGAGTAGGAGATCGGGGTTGAGTTCCAGCGATGTGGAGAAGCGGCGCAAGATCTACGGGTTGAATGAATTGGAGAAGCACGAGGGGCCGTCGATTTGGAGTTTAATTCTGGAGCAGTTTCAGGATACTCTGGTTCGGATTCTACTCGTGGCCGCGGTGATTTCGTTCATTACGGCGTTTGTCGAGCCTCTGGTGATTTTCTTGATATTGATTGCGAATGCTATTGTTGGGGTTTGGCAAGAGAACAATGCGGAGAAGGCGTTGGAGGCCCTTAAGGAGATTCAATCTGAGCAGGCTGCCGTGATCCGCAATAATCAACGCATTCCCAATTTGCCGGCGAAGGAGCTTGTGCCCGGTGACATCGTGGAACTTAAGGTCGGGGATAAGGTGCCTGCAGATATGCGGGTTGTGGAATTGATTAGCTCAACTCTGCGTCTGGAACAGGGGTCGTTGACCGGAGAGAGTGAAGCAGTGAATAAGACAAATAAGCCTGTCCCCGAGGATGCCGACATTCAAGGGAAAAGGTGTATGGTTTTTGCAGGAACGACTGTTGTGAATGGGAACTGCATTTGCTTGGTGACCCAGACGGGTATGGAGACAGAGATTGGAAAGGTGCATACTCAAATTCATGTGGCTTCCCAGAGTGAGGAAGACACGCCTTTGAAGAAAAAGTTGAATGAGTTTGGAGAGTCGCTGACAGTGATAATTGGAGTGATATGTGCGTTGGTATGGCTTATCAATATTGCAGTGGCATTGGCTGTTGCTGCCATTCCGGAAGGTTTACCGGCAGTTATCACCACTTGCTTGGCTCTAGGCACACGCAAGATGGCTCAGAAGAATGCTCTTGTGCGAAAGCTGCCAAGTGTTGAAACTCTGGGCTGCACAACTGTGATTTGTTCAGATAAAACGGGTACCTTAACTACTAACCAGATGGCAGTGGCAAAGCTGATTTCTGCTGTATGCAATGACGCTGGTGTGGCACAGTCAGAGCATAAGTATGTTGCCAATGGAATGCCAACAGAGGCAGCTCTGAAGGTTCTGGTCGAGAAAATGGGTCCTCCTGCAGTCGATGATGACAAATCATTTTCAAGTTCTGGTGATCTGCTACGTTGCTGCCAACGCTGGAATGAAAATGAACGTCGAATTGCTACTCTTGAGTTTGATCGTGATCGCAAGTCTATGGGGGTTATTGTCAATTCTCACTCAGGAAAAAAGTCATTGCTAGTGAAGGGTGCAGTAGAAAATCTATTGGAGAGAAGCAACTCTGTTCAGTTGCTTGATGGTTCTGTTGTAGAACTGGGTGATAATTCTAGGAGCCTTATTTTAGAAGCACTTCACGAAATGTCAAGTGGTGCATTACGTTGTTTGGGTTTTGCATACAAAGATGAGCTCCCTGACTTTGCAACATATGATGGTGATGAAAATCATCCAGCTCATGGTCTTCTACTCAATCCTGCCAACTATTCATCAATTGAGAGGAACCTTACTTTTGTAGGCTTGGTTGGGCTGAGGGATCCTCCTCGTGCAGAGGTTCACCAAGCAATTGAAGACTGCAGAGCAGCCGGTATTCGTGTTATGGTCATCACAGGCGATAACAAGAATACAGCAGAAGCTATTTGTCATGAAATAGGTGTATTTGGACCTAATGAGGACATTAGGTCGAAAAGCTTAACTGGGAAAGAGTTCATGGAACTTCGGGATCAGAAAGCACATCTGAGACAAAATGGTGGGCTTCTGTTCTCTAGGGCTGAACCTAGGCATAAACAAGAGATCGTGAGGCTGCTTAAAGAAGATGGGGAAGTGGTCGCCATGACTGGTGATGGAGTGAATGATGCGCCTGCCTTGAAACTGGCTGATATTGGCATTGCTATGGGTATTGCTGGGACAGAGGTTGCTAAAGAAGCCTCTGATATGGTGTTGGCAGACGATAATTTTAGTACAATAGTTGCTGCTGTTGGGGAAGGGCGATCTATCTACAACAATATGAAGGCTTTTATCAGGTATATGATTTCCTCAAATATTGGTGAGGTTGCATCCATATTTTTAACAGCAGCTTTAGGGATCCCTGAAGGGTTGATACCTGTTCAGCTTTTATGGGTCAACCTTGTTACTGATGGCCCCCCTGCAACTGCTTTGGGATTCAATCCACCAGATAGGGACATAATGAAGAAACCACCTCGTAGAAGTGATGACTCACTCATCAGTGCTTGGATCTTGTTCCGCTATCTGGTAATTGGATTGTATGTTGGAATAGCAACCGTTGGTGTATTTGTCATTTGGTACACGCATAGTTCCTTCTTGGGCATTGACCTCAGTGGGGATGGCCACACCCTTGCCACTACACTGTCTCTTTCAGTCCTGGTTGCCATTGAAATGTTCAATTCCCTCAATGCCCTTTCAGAGGATGGGAGTCTTCTAGTGATGCCTCCATGGGTCAATCCGTGGCTCCTGGTAGCCATGTCTGTCTCATTTGGCTTGCACTTTCTGATTCTGTATGTGCCGGTTCTTGCTCAAGTATTCGGGATTGTGCCCCTCAGTTTGAACGAATGGCTATTGGTTTTGGCGGTTGCATTCCCAGTGATTTTAATTGATGAGATTCTAAAGTTGGTGGGGCGATGTACAAGCGGTTTTCAAACATCCAGCACAAGGAAATCCTTGAAGCCGAAGTCAGAATGA 2793 46.94 MGKGGEDYGKREVSSSKVSGPEVFPAWGREVQECEKHYGVSRRSGLSSSDVEKRRKIYGLNELEKHEGPSIWSLILEQFQDTLVRILLVAAVISFITAFVEPLVIFLILIANAIVGVWQENNAEKALEALKEIQSEQAAVIRNNQRIPNLPAKELVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKTNKPVPEDADIQGKRCMVFAGTTVVNGNCICLVTQTGMETEIGKVHTQIHVASQSEEDTPLKKKLNEFGESLTVIIGVICALVWLINIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKLISAVCNDAGVAQSEHKYVANGMPTEAALKVLVEKMGPPAVDDDKSFSSSGDLLRCCQRWNENERRIATLEFDRDRKSMGVIVNSHSGKKSLLVKGAVENLLERSNSVQLLDGSVVELGDNSRSLILEALHEMSSGALRCLGFAYKDELPDFATYDGDENHPAHGLLLNPANYSSIERNLTFVGLVGLRDPPRAEVHQAIEDCRAAGIRVMVITGDNKNTAEAICHEIGVFGPNEDIRSKSLTGKEFMELRDQKAHLRQNGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDRDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFVIWYTHSSFLGIDLSGDGHTLATTLSLSVLVAIEMFNSLNALSEDGSLLVMPPWVNPWLLVAMSVSFGLHFLILYVPVLAQVFGIVPLSLNEWLLVLAVAFPVILIDEILKLVGRCTSGFQTSSTRKSLKPKSE* 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13891618 13899168 + Vvi8g649 Vvi8g649 790872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g649 930 Gene3D - 653 915 - -
Vvi8g649 930 SUPERFAMILY Calcium ATPase, transmembrane domain M 29 912 IPR023298 -
Vvi8g649 930 Gene3D - 233 365 - -
Vvi8g649 930 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Vvi8g649 930 ProSitePatterns E1-E2 ATPases phosphorylation site. 340 346 IPR018303 -
Vvi8g649 930 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 287 - -
Vvi8g649 930 Gene3D - 142 232 - -
Vvi8g649 930 SUPERFAMILY HAD-like 336 748 IPR036412 -
Vvi8g649 930 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 618 725 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi8g649 930 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 104 356 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi8g649 930 Pfam Cation transporter/ATPase, N-terminus 29 94 IPR004014 -
Vvi8g649 930 PANTHER CALCIUM-TRANSPORTING ATPASE 4 287 - -
Vvi8g649 930 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 345 542 IPR023299 GO:0000166
Vvi8g649 930 MobiDBLite consensus disorder prediction 1 22 - -
Vvi8g649 930 Pfam Cation transporting ATPase, C-terminus 729 909 IPR006068 -
Vvi8g649 930 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Vvi8g649 930 PRINTS P-type cation-transporting ATPase superfamily signature 538 549 - -
Vvi8g649 930 PRINTS P-type cation-transporting ATPase superfamily signature 644 663 - -
Vvi8g649 930 PRINTS P-type cation-transporting ATPase superfamily signature 668 680 - -
Vvi8g649 930 PRINTS P-type cation-transporting ATPase superfamily signature 338 352 - -
Vvi8g649 930 PRINTS P-type cation-transporting ATPase superfamily signature 560 570 - -
Vvi8g649 930 PRINTS Sodium/potassium-transporting ATPase signature 773 794 - -
Vvi8g649 930 PRINTS Sodium/potassium-transporting ATPase signature 331 352 - -
Vvi8g649 930 PANTHER CALCIUM-TRANSPORTING ATPASE 356 819 - -
Vvi8g649 930 PANTHER CALCIUM-TRANSPORTING ATPASE 286 356 - -
Vvi8g649 930 PANTHER CALCIUM-TRANSPORTING ATPASE 818 929 - -
Vvi8g649 930 SFLD p-type atpase 319 696 IPR044492 -
Vvi8g649 930 Gene3D - 366 542 IPR023299 GO:0000166
Vvi8g649 930 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 356 819 - -
Vvi8g649 930 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 286 356 - -
Vvi8g649 930 Pfam haloacid dehalogenase-like hydrolase 335 658 - -
Vvi8g649 930 Gene3D - 77 141 - -
Vvi8g649 930 Pfam E1-E2 ATPase 133 318 - -
Vvi8g649 930 SUPERFAMILY Calcium ATPase, transduction domain A 137 246 IPR008250 -
Vvi8g649 930 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 818 929 - -
Vvi8g649 930 SFLD Haloacid Dehalogenase 319 696 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g367 Vvi8g649 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g649 K01537 - vvi:100248326 1724.91