Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g660 ATGATATCAATCTATTTCATGAAAATGGTTAAACCCTGTTGGAAGCCGTCCGTAGAAGGAGATTCCAGTGGTCGAGTTGATGGGTTGTTGTGGTATAAGGACCTGGGCCAACATATTAACGGTGAATTCTCAATGGCTGTGATTCAGGCCAATAGTTTGTTGGAGGACCAAAGCCAGCTCGAGTCCGGGCCCTTGAGTTTCCTGGATTCGGGGCCTTATGGGACCTTCATTGGTGTATATGACGGACATGGAGGGCCAGAGGCTTCCCGCTTTGTTAATGAAAACCTCTTCCCCAATCTTAAGAAATTTGCAACCGAGCATCAAGAGATATCGGAAAGTGTTATTAGAAAAGCTTTCTCAGCAACAGAAGAGGGTTTTCTCTCACTTGTGAAGAAGCAGTGGCTCACTAAGCCACAGATTGCATCTGTGGGATCATGTTGTTTGGCAGGAATCATATGCAATGGACTGCTATATATTGCAAATGTTGGAGATTCCCGGGCTGTGCTTGGGAGGGCAGAAAGGGCCAGCAGAGAAGTCACAGCTATTCAGTTATCAACAGAGCACAATGCTAGCATTGAATCTGTGAGGGAAGAACTTCGGTCATTACACCCCCATGATAAACATATTGTGGTCTTAAGACACAAGGTTTGGCGTGTGAAGGGACTCATACAGGTTTCAAGATCCATAGGTGACGCATATCTTAAGAAGGCAGAGTTCAACAGAGAGCCTCTCCTGTCCAGGTTTAGATTGCCTCAACCCTTCATCGAGCCTATCCTTAGCTCAGAACCATCAATATCTGTACACAAAATCCGGCCTGAAGACCAGTTTATCATATTTGCTTCTGATGGCCTGTGGGAGCATCTTAGCAACCAGGAGGCGGTCAACATTGTCAACAATTACCCACGTAATGGAATTGCCCGGAAACTTGTCAAAACTGCACTTCAAGAAGCAGCAAAGAAAAGAGAAATGAGGTACTCTGACCTGAAAAAGATAGACAGAGGGGTGAGGAGACATTTTCACGATGATATCACGGTGGTAGTTGTGTTTCTTGATCCCCTTCTGATCAAAAGGAGCTCCTCCAGCGGTTGCCCGTTCTCGATAAAAGGAGGTGTTAAGGCCCCCGCCCCTGCTGCTGAGGTATAG 1143 46.28 MISIYFMKMVKPCWKPSVEGDSSGRVDGLLWYKDLGQHINGEFSMAVIQANSLLEDQSQLESGPLSFLDSGPYGTFIGVYDGHGGPEASRFVNENLFPNLKKFATEHQEISESVIRKAFSATEEGFLSLVKKQWLTKPQIASVGSCCLAGIICNGLLYIANVGDSRAVLGRAERASREVTAIQLSTEHNASIESVREELRSLHPHDKHIVVLRHKVWRVKGLIQVSRSIGDAYLKKAEFNREPLLSRFRLPQPFIEPILSSEPSISVHKIRPEDQFIIFASDGLWEHLSNQEAVNIVNNYPRNGIARKLVKTALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDPLLIKRSSSSGCPFSIKGGVKAPAPAAEV* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13976817 13979949 + Vvi8g660 Vvi8g660 790883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g660 380 SMART PP2C_4 32 348 IPR001932 -
Vvi8g660 380 CDD PP2Cc 43 350 IPR001932 -
Vvi8g660 380 SUPERFAMILY PP2C-like 67 352 IPR036457 -
Vvi8g660 380 Pfam Protein phosphatase 2C 75 319 IPR001932 -
Vvi8g660 380 PANTHER PROTEIN PHOSPHATASE 2C 67-RELATED 11 372 - -
Vvi8g660 380 ProSiteProfiles PPM-type phosphatase domain profile. 42 350 IPR001932 -
Vvi8g660 380 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Vvi8g660 380 Gene3D - 33 357 IPR036457 -
Vvi8g660 380 PANTHER ALPHABET, ISOFORM E-RELATED 11 372 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g660 Vvi13g203 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g660 K01102 - vvi:100241474 741.11