Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g667 ATGGGTTGGTTTCTTTGCTCTGGAAAATCAAACCAAGCTACCAAGAAAAAGAGGAAGAAGCCCGTTGATCAGATCCAAGTCCAAACCACTTCTGAGAAATTGAAGGCAAATCCTTCCTTCAATGTGAAGGAAGCCTCAAAGAATGGAGGGCCTGACCACATTGCAGCACAGACATTCACATTCCGTGAATTGGCTGCTGCTACTAAAAATTTCAGGGGAGAATGTCTTTTGGGAGAGGGGGGTTTTGGTAGGGTATATAAAGGTCGTATTGCAAATACTAATCAGGCTGTAGCTATCAAGCAACTTGATCGTAATGGATTGCAAGGGAATCGGGAATTCCTAGTCGAAGTATTGATGTTGAGTCTGCTTCACCACCCTAACCTTGTTAATCTAATTGGCTATTGTGCTGATGGAGATCAAAGACTACTAGTCTATGAGTACATGCCACTGGGATCTCTTGAAGATCATCTACATGATGTTTCACTTGGTAAGAAACGACTGGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCAAAAGGATTGGAGTATTTACATGACAAAGCCAGCCCCCCTGTTATATACCGTGATCTAAAATGCTCTAACATTTTGCTTGGTGAGGATTTTCATCCCAAGTTATCTGATTTTGGCTTGGCCAAACTTGGGCCTGTTGGAGATAATACCCATGTGTCTACAAGGGTTATGGGCACCTATGGATATTGTGCCCCAGAGTATGCAATGACAGGTCAATTGACTCTGAAATCAGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAAATCATAACAGGCAGGAAAGCAATTGACAATTCTAAAGCTGCAGGAGAGCATAATCTGGTTGCTTGGGCAAGACCCCTGTTCAAAGATAGAAGGAAATTTTTACATATGGCAGATCCAATGCTACAAGGTCAGTATCCTTTAAGAGGGTTGTACCAAGCTCTTGCAGTTGCTGCAATGTGTGTTCAGGAGCAACCTAATCTGCGCCCACTTATTGTTGATGTTGTCACCGCTTTGACTTACCTGGCCGCACAAACATATGACCCTGACACTCAGCCAGTCCAAAGCTCCAGAGTCGCCCCTTCTACTCCACCTAGAGCCAAAAAGGATGGTGATAGGAAGCTCCCAAGCAGTGCTGGATCGCAAAAAGATCGAACCCGAAGACTAAATTAA 1191 43.66 MGWFLCSGKSNQATKKKRKKPVDQIQVQTTSEKLKANPSFNVKEASKNGGPDHIAAQTFTFRELAAATKNFRGECLLGEGGFGRVYKGRIANTNQAVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDVSLGKKRLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLKCSNILLGEDFHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEHNLVAWARPLFKDRRKFLHMADPMLQGQYPLRGLYQALAVAAMCVQEQPNLRPLIVDVVTALTYLAAQTYDPDTQPVQSSRVAPSTPPRAKKDGDRKLPSSAGSQKDRTRRLN* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14023738 14027677 - Vvi8g667 Vvi8g667 790890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g667 396 PANTHER OS07G0668900 PROTEIN 1 381 - -
Vvi8g667 396 Pfam Protein tyrosine and serine/threonine kinase 76 289 IPR001245 GO:0004672|GO:0006468
Vvi8g667 396 Gene3D Phosphorylase Kinase; domain 1 16 147 - -
Vvi8g667 396 SUPERFAMILY Protein kinase-like (PK-like) 57 367 IPR011009 -
Vvi8g667 396 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vvi8g667 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi8g667 396 MobiDBLite consensus disorder prediction 371 396 - -
Vvi8g667 396 CDD STKc_IRAK 77 346 - -
Vvi8g667 396 MobiDBLite consensus disorder prediction 356 396 - -
Vvi8g667 396 Gene3D Transferase(Phosphotransferase) domain 1 148 364 - -
Vvi8g667 396 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g667 396 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 381 - -
Vvi8g667 396 SMART serkin_6 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g667 Vvi13g199 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76821 PF07714 PK_Tyr_Ser-Thr 4.00E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g667 - - vvi:100251737 800.816