Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g678 ATGTTGGATCTCAATCTTAATGATGTTTCGGATGATTCATTTCACGGTTCTACCCAGGCGGTGGATCCGGGGAAGCTCCTTGACCTTTCTAGCAACCAAATGGAAGATTCTGGAAGCTTCAATTCCTCCATCGTCAATGCCGATGCCTTGAGCAGCACCACCGCCGACGATGACTCTTCTTCTAACCACCTCGATCACTGCTGCGGCATTGTAGCGTTTAGCTTCGATTTCTTCAAGCAAAATGAAGATCATGACAATAAGAGCTCAGATTCTGTTACGAGGCAGTTTTTCCCGGTGACCAGTGGTGGGGAAGGTGACTGTTCTTTGGGTTCTTCTTTGCAGCATCCGTGTATCCTGCAGGTGGGTTCCGGTGGCCCGCTGCTGCCAAAGAAACCACAACAGCAACAGCAGGTGAAGAAGAGTCGGCGGGGGCCAAGGTCACGGAGCTCGCAGTATCGAGGAGTTACCTTTTATCGGAGAACTGGGAGATGGGAATCGCATATATGGGATTGTGGTAAACAAGTGTATTTGGGTGGATTTGACACTGCGCATGCTGCAGCTAGGGCATATGATCGAGCTGCCATCAAGTTCCGCGGTGCTGATGCCGATATCAATTTTGCTGTCAGTGATTATGACGAGGACATTAAGCAGATGAGTAACTTCACCAAGGAAGAGTTTGTGCATGTTCTCCGTCGCGGGAGCACTGGATTCTCGAGAGGAAGTTCCAAGTACAGGGGAGTGACACTGCACAAATGTGGTCGATGGGAAGCTCGAATGGGACAGTTTCTGGGCAAGAAGTATATTTATCTTGGTCTGTTCGATAGTGAGATAGAAGCTGCAAGGGCCTACGACAAGGCTGCTATAAAATGCAATGGACGAGAAGCAGTAACCAACTTTGAGCCAAGCACATACGAAGGAGAGATAATCTTCCCAGCTGATAATGGAGGGAGTAGCCAAAATCTAAACCTGTTACCCAATCTTGATCTGCACTTGGGAGTCGCTCCATATTTTTCTGATGAACCAATGTCTGATGAACCAGTTAGGAACAGCAAAGCAAATGGTTCTCCTTCCCGGCAGGGCCACGATGCCATGCCTGATGACAGGGGAGAAAGGATTGAGAACTCTACTTCAGCAACACTGGGGGTTCATCCATCATATGGCCTGGTAATGGCATCTGATCACCCTCCTAGCTGGAGTGGTGTAAATTCTCGTGTCTTTCCTATCTATAAGGAAAGAGCAATAGAGAAGAGGATTGAAGTTGATCACTTGCCAAACTGGGCATGGCAAAATCATGGCCCTTATGGTGGGGCTACTCCACCTCTCTTCTCTACTGCAGCATCATCAGGATTCTTGTCTTCGGTTACAACTGCTTCACCAGCTAATCCCACTCAAGGCAGCTTACAGAGTACAACAGTTCTCCAGCACTATTACTCTCCATCACTCACCAACACCACCAGTATATCCCCTTACTACTACTGCAGGAGCTGA 1488 48.32 MLDLNLNDVSDDSFHGSTQAVDPGKLLDLSSNQMEDSGSFNSSIVNADALSSTTADDDSSSNHLDHCCGIVAFSFDFFKQNEDHDNKSSDSVTRQFFPVTSGGEGDCSLGSSLQHPCILQVGSGGPLLPKKPQQQQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGADADINFAVSDYDEDIKQMSNFTKEEFVHVLRRGSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAAIKCNGREAVTNFEPSTYEGEIIFPADNGGSSQNLNLLPNLDLHLGVAPYFSDEPMSDEPVRNSKANGSPSRQGHDAMPDDRGERIENSTSATLGVHPSYGLVMASDHPPSWSGVNSRVFPIYKERAIEKRIEVDHLPNWAWQNHGPYGGATPPLFSTAASSGFLSSVTTASPANPTQGSLQSTTVLQHYYSPSLTNTTSISPYYYCRS* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14133340 14136582 - Vvi8g678 Vvi8g678 790901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g678 495 PRINTS Ethylene responsive element binding protein signature 244 255 IPR001471 GO:0003700|GO:0006355
Vvi8g678 495 PRINTS Ethylene responsive element binding protein signature 282 302 IPR001471 GO:0003700|GO:0006355
Vvi8g678 495 MobiDBLite consensus disorder prediction 124 152 - -
Vvi8g678 495 CDD AP2 242 302 IPR001471 GO:0003700|GO:0006355
Vvi8g678 495 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 489 - -
Vvi8g678 495 ProSiteProfiles AP2/ERF domain profile. 243 300 IPR001471 GO:0003700|GO:0006355
Vvi8g678 495 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 489 - -
Vvi8g678 495 Gene3D AP2/ERF domain 150 209 IPR036955 GO:0003700|GO:0006355
Vvi8g678 495 Gene3D AP2/ERF domain 242 301 IPR036955 GO:0003700|GO:0006355
Vvi8g678 495 SUPERFAMILY DNA-binding domain 242 301 IPR016177 GO:0003677
Vvi8g678 495 ProSiteProfiles AP2/ERF domain profile. 151 207 IPR001471 GO:0003700|GO:0006355
Vvi8g678 495 SUPERFAMILY DNA-binding domain 150 208 IPR016177 GO:0003677
Vvi8g678 495 CDD AP2 151 209 IPR001471 GO:0003700|GO:0006355
Vvi8g678 495 Pfam AP2 domain 151 199 IPR001471 GO:0003700|GO:0006355
Vvi8g678 495 Pfam AP2 domain 242 292 IPR001471 GO:0003700|GO:0006355
Vvi8g678 495 MobiDBLite consensus disorder prediction 340 371 - -
Vvi8g678 495 SMART rav1_2 151 213 IPR001471 GO:0003700|GO:0006355
Vvi8g678 495 SMART rav1_2 243 306 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g752 Vvi8g678 ECH
Vvi8g678 Vvi13g148 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15186 PF00847 AP2 1.20E-09 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g678 K09284 - vvi:100244807 947.577