Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g685 ATGGCCGACGCTGCTGCGAGCCCCGGCGAAGGTAGTCACGAGAGCGGCGAGCAGATCCCCCACTCGAACGTGCGCGAGCAAGATCGGTTTCTTCCGATCGCGAATATTAGCCGGATCATGAAGAAGGCGCTTCCCGCGAATGGAAAGATCGCTAAGGATGCGAAAGAGATCATGCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACTAGCGAGGCGAGTGATAAATGTCAGAGAGAGAAGAGGAAGACTATTAATGGGGATGATTTGCTCTGGGCAATGGCGACTTTAGGGTTTGAGGATTATATTGATCCGCTGAAGTTGTACTTGGCTGCATACAGAGAGGGTGACACCAAGGGACCGGCAAAGGGTGGAGATGGGCCGGCTAGGAAAGATGCAGCTGGAGCTCAATCAAGCATTAATTCCCACATTTCACATCAAGGTCCTTACACGCAAAATGTGAACTATGAGACTCCTCAACGTTGA 486 51.03 MADAAASPGEGSHESGEQIPHSNVREQDRFLPIANISRIMKKALPANGKIAKDAKEIMQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKLYLAAYREGDTKGPAKGGDGPARKDAAGAQSSINSHISHQGPYTQNVNYETPQR* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14202421 14204857 + Vvi8g685 Vvi8g685 790908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g685 161 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi8g685 161 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 156 - -
Vvi8g685 161 SUPERFAMILY Histone-fold 27 154 IPR009072 GO:0046982
Vvi8g685 161 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vvi8g685 161 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vvi8g685 161 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vvi8g685 161 MobiDBLite consensus disorder prediction 1 27 - -
Vvi8g685 161 MobiDBLite consensus disorder prediction 117 161 - -
Vvi8g685 161 Gene3D Histone, subunit A 17 150 IPR009072 GO:0046982
Vvi8g685 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Vvi8g685 161 MobiDBLite consensus disorder prediction 135 161 - -
Vvi8g685 161 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15188 PF00808 CBFD_NFYB_HMF 4.30E-28 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g685 K08065 - vvi:100265391 320.857