Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g688 | ATGCATCTTCCTTTCATTTTAAAAGGCCGGGTGCCTCGAACAGTAGAGTGTGAATTGACCGAAGATCTAGTTGATGCATGCATTCCTGGAGATGTGGTGACTGTTACTGGAATTATAAGGCAAATCAATAATTACATGGATATTGGTGGAGGAAAATCAAAAAACAAGAACCAAGGATTGTTCTATTTGTACCTAGAAGCAGTTTCAATTAAAAATTCCAAGTCGCAGTATATATCTGAGGATTTGCAAGATTCTAATGCTGATGCTAGAGCTACAGAGCTGTTAGATTTATTCTCATTTTCTCCAAGAGATTTGGAATTCATTGTTAAGTTCTCAGAGGAACATGGTTCAGACAGATTTCGACAAATACTACAATCAATTTGCCCTTCCATTTATGGACATGAGCTTGTCAAAGCGGGAATAACATTAGCACTGTTTGGAGGTGTCCAAAAGTATTCAACGGATAAGAACAAGGTCCCTGTCAGAGGAGACATCCATATCATAGTTGTTGGTGATCCTGGACTCGGTAAAAGCCAACTATTGCAAGCAGCAGCTGCCATTTCTCCACGTGGCATTTATGTGTGTGGCAATGCTACAACCAATGCTGGGCTTACTGTAGCTGTTGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAGGCTGGTGCCATGGTCCTTGCTGATCGTGGATTATGCTGTATTGATGAGTTTGACAAAATGTCAGCAGAACATCAGTCTCTTCTAGAAGCCATGGAGCAACAGTGTGTCTCTGTTGCAAAGGCTGGACTTGTGGCAAGTTTATCAGCACGAACTTCTGTCTTAGCAGCGGCAAATCCTGTTGGTGGTCATTATAACCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTGGATAAGCGAGTCTCCGAGCATATTATGTCACTTCATGCTGGATGTGGAGAAAATTCACCAGCTGCAAAAAGGCCATATATTGCTGCTCACACTGTTGGAGGCATAGATATGAATGCAAAAAGTGGTTCTTTAGTTTCAAGGTTGAGACTTGACCCAAAAAAGGACATGGATTTTGTTCCATTGCCTGCTCCACTTCTTCGCAAATATATTGCTTATGCACGAACTTTTGTCTTTCCGAGAATGTCAAAACCAGCAGCAGAAATACTACAGAAGTTTTACTTACGACTAAGAGACCATAGTACATCAGCAGATGGTACGCCAATAACTGCAAGGCAACTGGAAAGTTTAGTGAGGCTGGCTGAAGCTCGAGCCAGGCTGGACTTGAGAGAAGAAATAACAGCCCAGGATGCTTTGGATGTTGTTGAGATAATGAAGGAATCACTGTATGACAAGTACGTTGATGAGCATGGTTTTGTGGATTTTGGTCGGAGTGGGGGAATGAGTCAGCAGAAAGAAGCAAAACGATTTTTAGGTGCCCTGCATAAACAAACAGAGTTGCAGAAAAAAGATTGCTTTTCAATTTCCGAAATATACAATTTAGCAGATAGAATTGGATTAAGAGTTCCGGATATTGACACTTTTGTGGATAATTTAAACACTGTTGGTTATCTACTCAAGAAGGGCCCTAAGACGTATCAGGTACTGTGA | 1662 | 40.91 | MHLPFILKGRVPRTVECELTEDLVDACIPGDVVTVTGIIRQINNYMDIGGGKSKNKNQGLFYLYLEAVSIKNSKSQYISEDLQDSNADARATELLDLFSFSPRDLEFIVKFSEEHGSDRFRQILQSICPSIYGHELVKAGITLALFGGVQKYSTDKNKVPVRGDIHIIVVGDPGLGKSQLLQAAAAISPRGIYVCGNATTNAGLTVAVVKDPMTSDYAFEAGAMVLADRGLCCIDEFDKMSAEHQSLLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHAGCGENSPAAKRPYIAAHTVGGIDMNAKSGSLVSRLRLDPKKDMDFVPLPAPLLRKYIAYARTFVFPRMSKPAAEILQKFYLRLRDHSTSADGTPITARQLESLVRLAEARARLDLREEITAQDALDVVEIMKESLYDKYVDEHGFVDFGRSGGMSQQKEAKRFLGALHKQTELQKKDCFSISEIYNLADRIGLRVPDIDTFVDNLNTVGYLLKKGPKTYQVL* | 554 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 14236327 | 14247891 | - | Vvi8g688 | Vvi8g688 | 790911 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g688 | 553 | SMART | mcm | 1 | 467 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Vvi8g688 | 553 | Coils | Coil | 234 | 254 | - | - | |
Vvi8g688 | 553 | Pfam | MCM OB domain | 8 | 42 | IPR033762 | - | |
Vvi8g688 | 553 | Gene3D | - | 97 | 475 | IPR027417 | - | |
Vvi8g688 | 553 | ProSiteProfiles | MCM family domain profile. | 119 | 326 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Vvi8g688 | 553 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 8 | 552 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Vvi8g688 | 553 | SMART | AAA_5 | 163 | 315 | IPR003593 | - | |
Vvi8g688 | 553 | Pfam | MCM P-loop domain | 117 | 330 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Vvi8g688 | 553 | PANTHER | DNA HELICASE MCM8 | 8 | 552 | - | - | |
Vvi8g688 | 553 | Pfam | MCM AAA-lid domain | 383 | 466 | IPR041562 | - | |
Vvi8g688 | 553 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 162 | 177 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Vvi8g688 | 553 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 222 | 236 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Vvi8g688 | 553 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 249 | 262 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Vvi8g688 | 553 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 273 | 285 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Vvi8g688 | 553 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 300 | 308 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Vvi8g688 | 553 | CDD | MCM8 | 123 | 465 | - | - | |
Vvi8g688 | 553 | SUPERFAMILY | Nucleic acid-binding proteins | 9 | 43 | IPR012340 | - | |
Vvi8g688 | 553 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 129 | 472 | IPR027417 | - | |
Vvi8g688 | 553 | Gene3D | - | 5 | 76 | IPR012340 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g688 | K10737 | - | vvi:100253345 | 1047.73 |