Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g688 ATGCATCTTCCTTTCATTTTAAAAGGCCGGGTGCCTCGAACAGTAGAGTGTGAATTGACCGAAGATCTAGTTGATGCATGCATTCCTGGAGATGTGGTGACTGTTACTGGAATTATAAGGCAAATCAATAATTACATGGATATTGGTGGAGGAAAATCAAAAAACAAGAACCAAGGATTGTTCTATTTGTACCTAGAAGCAGTTTCAATTAAAAATTCCAAGTCGCAGTATATATCTGAGGATTTGCAAGATTCTAATGCTGATGCTAGAGCTACAGAGCTGTTAGATTTATTCTCATTTTCTCCAAGAGATTTGGAATTCATTGTTAAGTTCTCAGAGGAACATGGTTCAGACAGATTTCGACAAATACTACAATCAATTTGCCCTTCCATTTATGGACATGAGCTTGTCAAAGCGGGAATAACATTAGCACTGTTTGGAGGTGTCCAAAAGTATTCAACGGATAAGAACAAGGTCCCTGTCAGAGGAGACATCCATATCATAGTTGTTGGTGATCCTGGACTCGGTAAAAGCCAACTATTGCAAGCAGCAGCTGCCATTTCTCCACGTGGCATTTATGTGTGTGGCAATGCTACAACCAATGCTGGGCTTACTGTAGCTGTTGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAGGCTGGTGCCATGGTCCTTGCTGATCGTGGATTATGCTGTATTGATGAGTTTGACAAAATGTCAGCAGAACATCAGTCTCTTCTAGAAGCCATGGAGCAACAGTGTGTCTCTGTTGCAAAGGCTGGACTTGTGGCAAGTTTATCAGCACGAACTTCTGTCTTAGCAGCGGCAAATCCTGTTGGTGGTCATTATAACCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTGGATAAGCGAGTCTCCGAGCATATTATGTCACTTCATGCTGGATGTGGAGAAAATTCACCAGCTGCAAAAAGGCCATATATTGCTGCTCACACTGTTGGAGGCATAGATATGAATGCAAAAAGTGGTTCTTTAGTTTCAAGGTTGAGACTTGACCCAAAAAAGGACATGGATTTTGTTCCATTGCCTGCTCCACTTCTTCGCAAATATATTGCTTATGCACGAACTTTTGTCTTTCCGAGAATGTCAAAACCAGCAGCAGAAATACTACAGAAGTTTTACTTACGACTAAGAGACCATAGTACATCAGCAGATGGTACGCCAATAACTGCAAGGCAACTGGAAAGTTTAGTGAGGCTGGCTGAAGCTCGAGCCAGGCTGGACTTGAGAGAAGAAATAACAGCCCAGGATGCTTTGGATGTTGTTGAGATAATGAAGGAATCACTGTATGACAAGTACGTTGATGAGCATGGTTTTGTGGATTTTGGTCGGAGTGGGGGAATGAGTCAGCAGAAAGAAGCAAAACGATTTTTAGGTGCCCTGCATAAACAAACAGAGTTGCAGAAAAAAGATTGCTTTTCAATTTCCGAAATATACAATTTAGCAGATAGAATTGGATTAAGAGTTCCGGATATTGACACTTTTGTGGATAATTTAAACACTGTTGGTTATCTACTCAAGAAGGGCCCTAAGACGTATCAGGTACTGTGA 1662 40.91 MHLPFILKGRVPRTVECELTEDLVDACIPGDVVTVTGIIRQINNYMDIGGGKSKNKNQGLFYLYLEAVSIKNSKSQYISEDLQDSNADARATELLDLFSFSPRDLEFIVKFSEEHGSDRFRQILQSICPSIYGHELVKAGITLALFGGVQKYSTDKNKVPVRGDIHIIVVGDPGLGKSQLLQAAAAISPRGIYVCGNATTNAGLTVAVVKDPMTSDYAFEAGAMVLADRGLCCIDEFDKMSAEHQSLLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHAGCGENSPAAKRPYIAAHTVGGIDMNAKSGSLVSRLRLDPKKDMDFVPLPAPLLRKYIAYARTFVFPRMSKPAAEILQKFYLRLRDHSTSADGTPITARQLESLVRLAEARARLDLREEITAQDALDVVEIMKESLYDKYVDEHGFVDFGRSGGMSQQKEAKRFLGALHKQTELQKKDCFSISEIYNLADRIGLRVPDIDTFVDNLNTVGYLLKKGPKTYQVL* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14236327 14247891 - Vvi8g688 Vvi8g688 790911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g688 553 SMART mcm 1 467 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi8g688 553 Coils Coil 234 254 - -
Vvi8g688 553 Pfam MCM OB domain 8 42 IPR033762 -
Vvi8g688 553 Gene3D - 97 475 IPR027417 -
Vvi8g688 553 ProSiteProfiles MCM family domain profile. 119 326 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi8g688 553 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 8 552 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi8g688 553 SMART AAA_5 163 315 IPR003593 -
Vvi8g688 553 Pfam MCM P-loop domain 117 330 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi8g688 553 PANTHER DNA HELICASE MCM8 8 552 - -
Vvi8g688 553 Pfam MCM AAA-lid domain 383 466 IPR041562 -
Vvi8g688 553 PRINTS Mini-chromosome maintenance (MCM) protein family signature 162 177 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi8g688 553 PRINTS Mini-chromosome maintenance (MCM) protein family signature 222 236 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi8g688 553 PRINTS Mini-chromosome maintenance (MCM) protein family signature 249 262 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi8g688 553 PRINTS Mini-chromosome maintenance (MCM) protein family signature 273 285 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi8g688 553 PRINTS Mini-chromosome maintenance (MCM) protein family signature 300 308 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi8g688 553 CDD MCM8 123 465 - -
Vvi8g688 553 SUPERFAMILY Nucleic acid-binding proteins 9 43 IPR012340 -
Vvi8g688 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 472 IPR027417 -
Vvi8g688 553 Gene3D - 5 76 IPR012340 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g688 K10737 - vvi:100253345 1047.73