Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g694 ATGGGAGAAGGGGAAGGTTGTTTGCCAGTGGTTAAGGATATCAAAGTGTTAAAGGATGGAAAAACGGAAAGTGAAAATTCTTCTAGAATGGAATTGAAGCGGGACCATGAATGTATTGCTGGCAATATCGAAACGGAGGCTTCTCCTAGGAAGAAGCCAGTGAAAGAAGCTTTGAATGAGGAAGGATGCTCAGAAGTTTCAAATCCGATTCTTTCTCCAAAATATAATGCTTCTAGCGTTCAAACTATTACGAGTCAGGTGGCTGAGTTAGCAAGCACTAACCAAGCGGTGTTAGGTGAAATCACGTCTACAAGTTCAGGAAATTCAGTTCCAGAGAGTTTGAGTGATGAAGAGCATAGCAGAAATGGTTCATCTGATGGAGTCTCAACAACTCAGGTTGTACTGGAAATTCCGAAGCATGTCAGCTCTACTGGAATCAGGAAAATTACATTCAAGTTTAGCAAGAGCAAGGAGGCTTATAATAGAACAAATATGCGTGTAAATACATGTTGGAATCTGGAAACCAGAAATCTTCATTTTCGTGCTCCTAATATGGAATTGAAAATGTCGAAGAAGGTTGTCCCAAAGAGCTACCCTACAAATGTTAAAAAGTTATTATCAACTGGTATTCTTGATGGGGCTCTGGTAAAATATATTTCTACTTCACGGGAGAAAGAGCTGCAGGGAGTTATAAGAGAAAGTGGATATTTGTGTGGCTGTTCAGCATGCAATTTCACCAAAGTTCTTACTGCCTATGAGTTTGAGCAGCATGCTGGTGGTAGAACTAGACACCCAAATAATCACATATACCTGGAGAATGGCAAGCCAATTTATAGTATCATTCAACAGCTTAAGACCGCCCCACTCAGTGATCTGGATGAAGTGATAAAAAATATTGCAGGTTCATCCGTCAATATGGAATGCTTCAAGGCTTGGAAAGCAAGTTTTCATCAAAACAATGGAGTGACCGAAGCAGATGAAAATTATCATGCTCAGCTCCTTAACCATCCCCAATCAATTGTAAGCTTTCCTGTTCAAGCCGTTGAAGACAGCTTTACTGGTTCGAGGTTACCTTTGAAACAAAAAGAACTTATGAAGGAGATGACACAAGAGCGGAAACATGCAGCAAAGAAGCCAAGCTCCTATATTTATGGCTCAGGTCTTCAACACAAGAAATCAAGTGAAGGAGCCATTAAGAAAAGGGATAATGATCTACATCGGTTACTTTTCATGCCAAATGGACTCCCTGATGGGGCTGAATTAGCATACTATGTCAAAGGCCAGAGAATACTTGGGGGTTACAAGCAGGGCAATGGTATAGTCTGCAGTCACTGTGACAGTGAGGTCAGCCCTTCTCAGTTTGAAGCTCATGCTGGATGGGCTGCTAGGCGTCAACCCTATCGCCATATCTATACTTCTAATGGATTGACGCTTCATGATATAGCTATATCATTGGCAAATGGTCAAAACTGTACCACTGGCGACAGTGATGATATGTGTACCTTATGTGGAGATGGAGGGGACCTGATTCTTTGTGATGGTTGTCCTCGGGCTTTTCATCCAGCTTGTTTAGAATTGCAGTGTCTCCCTGAAGGGGATTGGCGCTGTCCATGTTGTGTTGAAAATTTTTGTCCTGATAGAAAAGTTGCAAGACCAATTAGAATACAGTTGACCAGGGCTGTTAAAGCACCAGAATCTGAAATTGGTGGTTGTGTTGTTTGCAGGGCCCATGACTTCAGTGTCTCTAAATTTGATGATCGAACGGTTATGCTTTGTGACCAATGTGAAAAGGAATTCCATGTTGGTTGCTTGCGAGATAGTGGGTTGTGTGATTTAAAAGAACTCCCCAAGGATAAATGGTTCTGCTGTGATGACTGCAGTAGGGTCCATGTGGCTCTACAAAACTTGGCTTCCAGGGGACCAGAGATGATTCCAGCTTCAGTATCAAGCATGATAAACAGGAAGAATCTGGAAAAAGGCTTAATTGATGGAGCTGCTGATGATATTCAGTGGTGCATTTTAAGTGGAAAAAGTTGCTACAAAGAACATTTGCCGTTGCTTTCCAGGACTACTGCAATTTTTAGAGAATGTTTTGATCCCATAGTTGCAAGCTCTGGTCGGGATCTAATTCCTGTTATGGTGTACGGGAGAAACATATCTGGACAAGAGTTCGGTGGAATGTATTGTGTCGTTTTACTTGCAAAGTCCACTGTTGTATCTGCTGGACTTATCAGGGTTTTTGGTCAGGAGGTAGCTGAGCTACCTATAGTGGCCACAAGTAAAGAACATCAAGGAAAAGGTTTTTTCCGAGCACTATTCTCATGCATTGAGGAATTGCTGAGTTCCTTGGGTGTGAAAACCCTGGTGCTTCCTGCAGCTGAGGAAGCTGAAGCAATCTGGACGAATAAATTAGGCTTCCAAAAGATGTCTGAGGAGCGGATGTTAAAGTATACGAGGGAACTTCAGCTGACAATTTTCAAGGGAACATCAATGCTAGAGAAGGAAGTGCCATGTATTGTGGAATAA 2526 42.08 MGEGEGCLPVVKDIKVLKDGKTESENSSRMELKRDHECIAGNIETEASPRKKPVKEALNEEGCSEVSNPILSPKYNASSVQTITSQVAELASTNQAVLGEITSTSSGNSVPESLSDEEHSRNGSSDGVSTTQVVLEIPKHVSSTGIRKITFKFSKSKEAYNRTNMRVNTCWNLETRNLHFRAPNMELKMSKKVVPKSYPTNVKKLLSTGILDGALVKYISTSREKELQGVIRESGYLCGCSACNFTKVLTAYEFEQHAGGRTRHPNNHIYLENGKPIYSIIQQLKTAPLSDLDEVIKNIAGSSVNMECFKAWKASFHQNNGVTEADENYHAQLLNHPQSIVSFPVQAVEDSFTGSRLPLKQKELMKEMTQERKHAAKKPSSYIYGSGLQHKKSSEGAIKKRDNDLHRLLFMPNGLPDGAELAYYVKGQRILGGYKQGNGIVCSHCDSEVSPSQFEAHAGWAARRQPYRHIYTSNGLTLHDIAISLANGQNCTTGDSDDMCTLCGDGGDLILCDGCPRAFHPACLELQCLPEGDWRCPCCVENFCPDRKVARPIRIQLTRAVKAPESEIGGCVVCRAHDFSVSKFDDRTVMLCDQCEKEFHVGCLRDSGLCDLKELPKDKWFCCDDCSRVHVALQNLASRGPEMIPASVSSMINRKNLEKGLIDGAADDIQWCILSGKSCYKEHLPLLSRTTAIFRECFDPIVASSGRDLIPVMVYGRNISGQEFGGMYCVVLLAKSTVVSAGLIRVFGQEVAELPIVATSKEHQGKGFFRALFSCIEELLSSLGVKTLVLPAAEEAEAIWTNKLGFQKMSEERMLKYTRELQLTIFKGTSMLEKEVPCIVE* 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14306354 14324136 + Vvi8g694 Vvi8g694 790917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g694 841 MobiDBLite consensus disorder prediction 102 129 - -
Vvi8g694 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 563 IPR013083 -
Vvi8g694 841 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Vvi8g694 841 SMART PHD_3 499 540 IPR001965 -
Vvi8g694 841 SMART PHD_3 570 627 IPR001965 -
Vvi8g694 841 Gene3D - 717 822 - -
Vvi8g694 841 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 723 818 IPR016181 -
Vvi8g694 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Vvi8g694 841 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 675 828 IPR000182 GO:0016407
Vvi8g694 841 ProSitePatterns Zinc finger PHD-type signature. 500 539 IPR019786 -
Vvi8g694 841 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Vvi8g694 841 CDD NAT_SF 729 790 - -
Vvi8g694 841 MobiDBLite consensus disorder prediction 19 53 - -
Vvi8g694 841 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 34 837 - -
Vvi8g694 841 CDD PHD1_AIRE 499 539 - -
Vvi8g694 841 SUPERFAMILY FYVE/PHD zinc finger 495 546 IPR011011 -
Vvi8g694 841 ProSiteProfiles Zinc finger PHD-type profile. 497 542 IPR019787 -
Vvi8g694 841 PANTHER AUTOIMMUNE REGULATOR 34 837 - -
Vvi8g694 841 MobiDBLite consensus disorder prediction 19 41 - -
Vvi8g694 841 Pfam Tify domain binding domain 433 482 IPR032308 -
Vvi8g694 841 Pfam Tify domain binding domain 229 283 IPR032308 -
Vvi8g694 841 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g694 - - vvi:100246491 1674.06