Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g694 ATGGGAGAAGGGGAAGGTTGTTTGCCAGTGGTTAAGGATATCAAAGTGTTAAAGGATGGAAAAACGGAAAGTGAAAATTCTTCTAGAATGGAATTGAAGCGGGACCATGAATGTATTGCTGGCAATATCGAAACGGAGGCTTCTCCTAGGAAGAAGCCAGTGAAAGAAGCTTTGAATGAGGAAGGATGCTCAGAAGTTTCAAATCCGATTCTTTCTCCAAAATATAATGCTTCTAGCGTTCAAACTATTACGAGTCAGGTGGCTGAGTTAGCAAGCACTAACCAAGCGGTGTTAGGTGAAATCACGTCTACAAGTTCAGGAAATTCAGTTCCAGAGAGTTTGAGTGATGAAGAGCATAGCAGAAATGGTTCATCTGATGGAGTCTCAACAACTCAGGTTGTACTGGAAATTCCGAAGCATGTCAGCTCTACTGGAATCAGGAAAATTACATTCAAGTTTAGCAAGAGCAAGGAGGCTTATAATAGAACAAATATGCGTGTAAATACATGTTGGAATCTGGAAACCAGAAATCTTCATTTTCGTGCTCCTAATATGGAATTGAAAATGTCGAAGAAGGTTGTCCCAAAGAGCTACCCTACAAATGTTAAAAAGTTATTATCAACTGGTATTCTTGATGGGGCTCTGGTAAAATATATTTCTACTTCACGGGAGAAAGAGCTGCAGGGAGTTATAAGAGAAAGTGGATATTTGTGTGGCTGTTCAGCATGCAATTTCACCAAAGTTCTTACTGCCTATGAGTTTGAGCAGCATGCTGGTGGTAGAACTAGACACCCAAATAATCACATATACCTGGAGAATGGCAAGCCAATTTATAGTATCATTCAACAGCTTAAGACCGCCCCACTCAGTGATCTGGATGAAGTGATAAAAAATATTGCAGGTTCATCCGTCAATATGGAATGCTTCAAGGCTTGGAAAGCAAGTTTTCATCAAAACAATGGAGTGACCGAAGCAGATGAAAATTATCATGCTCAGCTCCTTAACCATCCCCAATCAATTGTAAGCTTTCCTGTTCAAGCCGTTGAAGACAGCTTTACTGGTTCGAGGTTACCTTTGAAACAAAAAGAACTTATGAAGGAGATGACACAAGAGCGGAAACATGCAGCAAAGAAGCCAAGCTCCTATATTTATGGCTCAGGTCTTCAACACAAGAAATCAAGTGAAGGAGCCATTAAGAAAAGGGATAATGATCTACATCGGTTACTTTTCATGCCAAATGGACTCCCTGATGGGGCTGAATTAGCATACTATGTCAAAGGCCAGAGAATACTTGGGGGTTACAAGCAGGGCAATGGTATAGTCTGCAGTCACTGTGACAGTGAGGTCAGCCCTTCTCAGTTTGAAGCTCATGCTGGATGGGCTGCTAGGCGTCAACCCTATCGCCATATCTATACTTCTAATGGATTGACGCTTCATGATATAGCTATATCATTGGCAAATGGTCAAAACTGTACCACTGGCGACAGTGATGATATGTGTACCTTATGTGGAGATGGAGGGGACCTGATTCTTTGTGATGGTTGTCCTCGGGCTTTTCATCCAGCTTGTTTAGAATTGCAGTGTCTCCCTGAAGGGGATTGGCGCTGTCCATGTTGTGTTGAAAATTTTTGTCCTGATAGAAAAGTTGCAAGACCAATTAGAATACAGTTGACCAGGGCTGTTAAAGCACCAGAATCTGAAATTGGTGGTTGTGTTGTTTGCAGGGCCCATGACTTCAGTGTCTCTAAATTTGATGATCGAACGGTTATGCTTTGTGACCAATGTGAAAAGGAATTCCATGTTGGTTGCTTGCGAGATAGTGGGTTGTGTGATTTAAAAGAACTCCCCAAGGATAAATGGTTCTGCTGTGATGACTGCAGTAGGGTCCATGTGGCTCTACAAAACTTGGCTTCCAGGGGACCAGAGATGATTCCAGCTTCAGTATCAAGCATGATAAACAGGAAGAATCTGGAAAAAGGCTTAATTGATGGAGCTGCTGATGATATTCAGTGGTGCATTTTAAGTGGAAAAAGTTGCTACAAAGAACATTTGCCGTTGCTTTCCAGGACTACTGCAATTTTTAGAGAATGTTTTGATCCCATAGTTGCAAGCTCTGGTCGGGATCTAATTCCTGTTATGGTGTACGGGAGAAACATATCTGGACAAGAGTTCGGTGGAATGTATTGTGTCGTTTTACTTGCAAAGTCCACTGTTGTATCTGCTGGACTTATCAGGGTTTTTGGTCAGGAGGTAGCTGAGCTACCTATAGTGGCCACAAGTAAAGAACATCAAGGAAAAGGTTTTTTCCGAGCACTATTCTCATGCATTGAGGAATTGCTGAGTTCCTTGGGTGTGAAAACCCTGGTGCTTCCTGCAGCTGAGGAAGCTGAAGCAATCTGGACGAATAAATTAGGCTTCCAAAAGATGTCTGAGGAGCGGATGTTAAAGTATACGAGGGAACTTCAGCTGACAATTTTCAAGGGAACATCAATGCTAGAGAAGGAAGTGCCATGTATTGTGGAATAA 2526 42.08 MGEGEGCLPVVKDIKVLKDGKTESENSSRMELKRDHECIAGNIETEASPRKKPVKEALNEEGCSEVSNPILSPKYNASSVQTITSQVAELASTNQAVLGEITSTSSGNSVPESLSDEEHSRNGSSDGVSTTQVVLEIPKHVSSTGIRKITFKFSKSKEAYNRTNMRVNTCWNLETRNLHFRAPNMELKMSKKVVPKSYPTNVKKLLSTGILDGALVKYISTSREKELQGVIRESGYLCGCSACNFTKVLTAYEFEQHAGGRTRHPNNHIYLENGKPIYSIIQQLKTAPLSDLDEVIKNIAGSSVNMECFKAWKASFHQNNGVTEADENYHAQLLNHPQSIVSFPVQAVEDSFTGSRLPLKQKELMKEMTQERKHAAKKPSSYIYGSGLQHKKSSEGAIKKRDNDLHRLLFMPNGLPDGAELAYYVKGQRILGGYKQGNGIVCSHCDSEVSPSQFEAHAGWAARRQPYRHIYTSNGLTLHDIAISLANGQNCTTGDSDDMCTLCGDGGDLILCDGCPRAFHPACLELQCLPEGDWRCPCCVENFCPDRKVARPIRIQLTRAVKAPESEIGGCVVCRAHDFSVSKFDDRTVMLCDQCEKEFHVGCLRDSGLCDLKELPKDKWFCCDDCSRVHVALQNLASRGPEMIPASVSSMINRKNLEKGLIDGAADDIQWCILSGKSCYKEHLPLLSRTTAIFRECFDPIVASSGRDLIPVMVYGRNISGQEFGGMYCVVLLAKSTVVSAGLIRVFGQEVAELPIVATSKEHQGKGFFRALFSCIEELLSSLGVKTLVLPAAEEAEAIWTNKLGFQKMSEERMLKYTRELQLTIFKGTSMLEKEVPCIVE* 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14306354 14324136 + Vvi8g694 Vvi8g694 790917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g694 841 MobiDBLite consensus disorder prediction 102 129 - -
Vvi8g694 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 563 IPR013083 -
Vvi8g694 841 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Vvi8g694 841 SMART PHD_3 499 540 IPR001965 -
Vvi8g694 841 SMART PHD_3 570 627 IPR001965 -
Vvi8g694 841 Gene3D - 717 822 - -
Vvi8g694 841 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 723 818 IPR016181 -
Vvi8g694 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Vvi8g694 841 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 675 828 IPR000182 GO:0016407
Vvi8g694 841 ProSitePatterns Zinc finger PHD-type signature. 500 539 IPR019786 -
Vvi8g694 841 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Vvi8g694 841 CDD NAT_SF 729 790 - -
Vvi8g694 841 MobiDBLite consensus disorder prediction 19 53 - -
Vvi8g694 841 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 34 837 - -
Vvi8g694 841 CDD PHD1_AIRE 499 539 - -
Vvi8g694 841 SUPERFAMILY FYVE/PHD zinc finger 495 546 IPR011011 -
Vvi8g694 841 ProSiteProfiles Zinc finger PHD-type profile. 497 542 IPR019787 -
Vvi8g694 841 PANTHER AUTOIMMUNE REGULATOR 34 837 - -
Vvi8g694 841 MobiDBLite consensus disorder prediction 19 41 - -
Vvi8g694 841 Pfam Tify domain binding domain 433 482 IPR032308 -
Vvi8g694 841 Pfam Tify domain binding domain 229 283 IPR032308 -
Vvi8g694 841 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g694 - - - vvi:100246491 1674.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g89 ECH 1 558 PHD Transcription Factor Family AT1G05380 51.0 1.0e-172 604.7
Vvi8g1095 ECH 234 869 PHD Transcription Factor Family AT2G36720 50.8 5.8e-204 708.4
Vvi8g694 . 25 841 PHD Transcription Factor Family AT3G53680 56.6 8.1e-260 893.6
Vvi6g395 ECH 260 399 PHD Transcription Factor Family AT3G53680 53.2 1.4e-38 158.7
Vvi1g555 . 10 647 PHD Transcription Factor Family AT5G22260 51.7 2.5e-187 652.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40