Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g715 ATGGCCAATGGGCTTGGGCTGGACTTAGACATCAGTTTCTTCCAGAAACGGGAACATCAAAATTGGTTGTTGTTCATTCGAAAACTCGCTCTTTCCCATTTTGAAGTTTCTTACAAATTATCAGCAACTTATTGTTCTTCAGGAATACTCAGCTGTTGGGAAAATCAAAGTTTAAAGTTTACTTCTCCTTTTTGGCGTGCGGAAAGTAGCTACTGGAACATGATGAGTGATAGACACCTGGGAGATATTCTTGGGGGCTTTGATCATAACCATACAGGCAAACAGAGCCCTTTCTCAGTTTCATCAAGCTACGACCATACTGCAACTGCTAGTGAGAATACACCAGGAGTGAACCATTTGGCTACTGATCATGAGAATAACAGCACTCCTCTATATGACAGTGCAGCAAAGAAAAAGAGAGTATCAAGAATCATCGGTGGGGGGCTGCGGCAGTTCAGTATCATAGTTTGTAAGAAGGTGGAGAACAAGAGGACAACCACATATAGTGAGGTTGCAGATGAAATTATAGCAGAGTTTGCTGCAGCACACAGTAAAACAGCAGTATCTCTGGATGAGTTTGATGAGAAGAATATCCGGCGACGGGTTTATGATGCATTGAATGTCCTTATGGCACTGGATATCATCACTAGAGACAAAAAGGAAATCAGGTGGAAGGGACTTCCAACTGCAGATTGGAAGGATATAGAAGAGGTCAAGGCACTACGTGTGAAGCTTATGACTAGGATGGAAAAGAAAACTGCCTACTTGAAAGATTTAGAAGATCAAATTGTAGGTCTCCAGAATCTGATGCTACGAAACCAGCAGTTGCTTAAGTCTGGAAATGTTCCTTCAGAAGGATTTCCTTTGCCATTTATATTGGTTCAAACAAGTCCTCATGCTACAGTTGAGATTGAGATTTCTGAGGACATGCAGCTGGTGCACTTTGACTTCAACAGTACACCCTTTTCCTTGCATGATGATGCTTACATTCTTAAGTTAATGCGGTGCTACCAACTGCCAGCTGAGAGTAGACATGTTTCTCAGAGTTCTTCAGTTCACTCAACTTCAAGCTCCGACATTGCATCTGGAACCGGAGTTTTTATAAGGGTTCTAATTATAATAATGTTGATCGTTTAA 1137 41.51 MANGLGLDLDISFFQKREHQNWLLFIRKLALSHFEVSYKLSATYCSSGILSCWENQSLKFTSPFWRAESSYWNMMSDRHLGDILGGFDHNHTGKQSPFSVSSSYDHTATASENTPGVNHLATDHENNSTPLYDSAAKKKRVSRIIGGGLRQFSIIVCKKVENKRTTTYSEVADEIIAEFAAAHSKTAVSLDEFDEKNIRRRVYDALNVLMALDIITRDKKEIRWKGLPTADWKDIEEVKALRVKLMTRMEKKTAYLKDLEDQIVGLQNLMLRNQQLLKSGNVPSEGFPLPFILVQTSPHATVEIEISEDMQLVHFDFNSTPFSLHDDAYILKLMRCYQLPAESRHVSQSSSVHSTSSSDIASGTGVFIRVLIIIMLIV* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14541922 14548657 + Vvi8g715 Vvi8g715 790938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g715 378 PANTHER TRANSCRIPTION FACTOR DP 74 365 IPR015648 GO:0005667|GO:0051726
Vvi8g715 378 PANTHER TRANSCRIPTION FACTOR-LIKE PROTEIN DPA 74 365 - -
Vvi8g715 378 SMART DP_2 233 365 IPR014889 -
Vvi8g715 378 Coils Coil 249 276 - -
Vvi8g715 378 Gene3D - 120 231 IPR036388 -
Vvi8g715 378 SUPERFAMILY Winged helix DNA-binding domain 147 227 IPR036390 -
Vvi8g715 378 Gene3D Transcription factor DP 232 364 IPR038168 -
Vvi8g715 378 SMART E2F_TDP_2 144 226 IPR003316 GO:0005667|GO:0006355
Vvi8g715 378 Pfam E2F/DP family winged-helix DNA-binding domain 148 226 IPR003316 GO:0005667|GO:0006355
Vvi8g715 378 Pfam Transcription factor DP 234 339 IPR014889 -
Vvi8g715 378 CDD DP_DD 233 334 IPR014889 -
Vvi8g715 378 SUPERFAMILY E2F-DP heterodimerization region 232 359 IPR037241 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15190 PF08781 DP 4.70E-34 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g715 K04683 - vvi:100240899 551.977