Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g716 ATGGTTTTTTCTTCCATGCCATCCTATCTTGATCCAGCCAACTGGCAACAGCCACACAATCATGAAGCTGGAAGTAGCGGTCTTCCAAACCAGCCGCCCCCTCCTCCACCTCCGCCTCCACAACCTCATGGAGGTGGCGGCACTGGCTCCATCAGGCCAGGTTCTATGGCTGACCGAGCCCGTCTCGCCAATATACCGTTGCCCGAAGCTGCTTTGAAGTGCCCAAGATGTGAATCAACAAACACAAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCTCGACACTTCTGCAAGACCTGTAGAAGGTACTGGACTAGAGGTGGTGCTCTGAGAAATGTTCCAGTGGGAGGAGGTTGCCGGAGAAACAAAAGAAGCAAAGGAAGTAGCTCAAAATCTCCTGTCAGCGGAGATCGCCAGGCGGGTTCTAGTTCAACAGGTGCAATCCACTCCAATTGTAGCACTGCTGAAATCCTAGGCCTCGCACCCCAGATTCCACCCATGCGTTTCATGGCCCCTTTACACCATCTCGCTGACTATGGCGCCGGCGATATAGGCTTAAACTACAGTGGAATTCCTACAGCAGTCGGGGGCACAGGTGACATGAATTTTCAGATAGGAAGTTTAGAGCAGTGGCGATTGCAGCAAACACAGCAATTCCCCTTCTTAGGTGGGTTGGATCCGCCACCAGGGTTATACCCATTAGAGGGTGGTGTTGAGCCATCCAATTATGTTGGGGGAAGCAGTCAGGTTCGGCCGAAGCTAACTGGGTCTGGGTTAAGTCAGGTGGCTTCCGTGAAGATGGAAGATAATCATGAGATGAATGTGGCAAGGCAGTTCTTGGGAATTCCAGGAAATGATCAGTATTGGGGTGGTAATGCATGGACAGATCTAGCTAGTTTTAGCTCTTCTTCCACTACAGAAACTAGTGGGGTGGGAAGGAATAGAAAGCTGCAACTGACCATGTAA 972 50.62 MVFSSMPSYLDPANWQQPHNHEAGSSGLPNQPPPPPPPPPQPHGGGGTGSIRPGSMADRARLANIPLPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPVSGDRQAGSSSTGAIHSNCSTAEILGLAPQIPPMRFMAPLHHLADYGAGDIGLNYSGIPTAVGGTGDMNFQIGSLEQWRLQQTQQFPFLGGLDPPPGLYPLEGGVEPSNYVGGSSQVRPKLTGSGLSQVASVKMEDNHEMNVARQFLGIPGNDQYWGGNAWTDLASFSSSSTTETSGVGRNRKLQLTM* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14550653 14554703 + Vvi8g716 Vvi8g716 790939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g716 323 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Vvi8g716 323 MobiDBLite consensus disorder prediction 28 44 - -
Vvi8g716 323 MobiDBLite consensus disorder prediction 1 27 - -
Vvi8g716 323 MobiDBLite consensus disorder prediction 130 150 - -
Vvi8g716 323 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Vvi8g716 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 308 IPR045174 GO:0003700|GO:0006355
Vvi8g716 323 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 7 308 - -
Vvi8g716 323 MobiDBLite consensus disorder prediction 116 150 - -
Vvi8g716 323 MobiDBLite consensus disorder prediction 1 55 - -
Vvi8g716 323 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Vvi8g716 323 MobiDBLite consensus disorder prediction 302 323 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g716 Vvi13g300 ECH
Vvi6g427 Vvi8g716 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15191 PF02701 zf-Dof 1.60E-32 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g716 - - vvi:100263156 534.643