Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g744 ATGATAATGGATCCCAGTCGTAGAGGATTCTCCAGTTCCGTCAATGGAATTCAATTGGGAAATCGACCTTTCTCCATTCTTTCGGATCACAACCTAGTTGCGGGAGCCAAATTTGAGAACTCATTGTTTGATCGCAGTTTTAGGGAGGTTCGCTACCTTAAGCCAGATCCAGCTTCTGCTAATACGGCCTCAGATGGTTTGAGCGTGAGCCCAGAGGAAGATGACTGTGATTTCTCTGATGAGGTTTTGAAGTACATAAACCAGATGCTTATGGAGGAAGACATGGAGGACCAGACTTATATGCTTCAGCAGTCATTGGATCTTCAAGCTGCTGAGAAATCCTTCTATGAAGTCCTCGGCAAGAAGTATCCTCCTAGTGGCAACTTAGCTGATAATTGCTGGATTCAGAGTCCAAGCGATTGTAATACCTCTCAGGTACAAGCATCGCCTTTTAGCTCTTCAAATATGAGGAAGAATCCTCAAAGGGAGGATATCGGATTGGAAGAGGAGAGGAGTACTAAGCAGGCAGCTGTTTATACTGAATCCACTTTGAGGTCAGAAATGTTTGACATGGTGTTGCTATGTAATAGGAATAATTGCAAGCCCCATTCGTCCACACCCCATGAAGCCTTGCAAAATGAAACAAGCAGTAATTTGCAGCAGCAAAATGGGCAAGAAGTGGTGGATTTGAGAACTCTTTTGATTCAGTGTGCACAAGCTGTTGCAGCGGATGATAGGAGGAGTGCAAATGAATTGCTCAAGCAGGTCAGGCAGCATTCTTCTCCTTTTGGGGATGGGAATCAAAGACTGGCTCATTGTTTTGCTGATGGTCTTGAGGCACGCTTGGCTGGTACCGGTAGCCAGATTTATAAAGGCCTTATAAGCAAGGGGAGATCTGCTGCCGATATTTTGAAAGCCTACCATCTATATAAAGCAACAAGACTCCACATCATAGATTTTGGTATCCTCTATGGTTTCCAATGGCCCACCTTTATCCAACGCCTCTCATCAAGACCTGGTGGACCCCCAAAGCTGCCAAAGAAATGGGAAACCATTCAACTTGAGGAACTCCAGATCGACAGGGATGAGCTGCTTGTTGTCAACTGTTTCGAGAGGCTCTGTTCCACTTCTCTGCCCAGTTTGATATGCTTGAGACTACTGTACTCCCTTGTGAAGGCTGGGAGAGAGTTGAGAGGCCAGAAACATACAAGCAGTGGCAACTCCGAAACCTAA 1233 45.5 MIMDPSRRGFSSSVNGIQLGNRPFSILSDHNLVAGAKFENSLFDRSFREVRYLKPDPASANTASDGLSVSPEEDDCDFSDEVLKYINQMLMEEDMEDQTYMLQQSLDLQAAEKSFYEVLGKKYPPSGNLADNCWIQSPSDCNTSQVQASPFSSSNMRKNPQREDIGLEEERSTKQAAVYTESTLRSEMFDMVLLCNRNNCKPHSSTPHEALQNETSSNLQQQNGQEVVDLRTLLIQCAQAVAADDRRSANELLKQVRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKGLISKGRSAADILKAYHLYKATRLHIIDFGILYGFQWPTFIQRLSSRPGGPPKLPKKWETIQLEELQIDRDELLVVNCFERLCSTSLPSLICLRLLYSLVKAGRELRGQKHTSSGNSET* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14792411 14795088 + Vvi8g744 Vvi8g744 790967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g744 410 Pfam GRAS domain family 311 345 IPR005202 -
Vvi8g744 410 Pfam GRAS domain family 230 310 IPR005202 -
Vvi8g744 410 MobiDBLite consensus disorder prediction 145 173 - -
Vvi8g744 410 ProSiteProfiles GRAS family profile. 221 410 IPR005202 -
Vvi8g744 410 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 150 312 IPR005202 -
Vvi8g744 410 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 311 345 IPR005202 -
Vvi8g744 410 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 130 IPR005202 -
Vvi8g744 410 MobiDBLite consensus disorder prediction 145 160 - -
Vvi8g744 410 PANTHER SCARECROW-LIKE PROTEIN 9 150 312 - -
Vvi8g744 410 PANTHER SCARECROW-LIKE PROTEIN 9 25 130 - -
Vvi8g744 410 PANTHER SCARECROW-LIKE PROTEIN 9 311 345 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g470 Vvi8g744 ECH
Vvi8g744 Vvi13g312 ECH
Vvi6g468 Vvi8g744 ECH
Vvi8g744 Vvi13g314 ECH
Vvi6g471 Vvi8g744 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15194 PF03514 GRAS 5.70E-16 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g744 - - vvi:100252795 390.193